Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC136604.1-202ENST00000425471 771 ntBASIC13.76□□□□□ -0.21
MSX2P35548 AC134915.1-201ENST00000426461 574 ntBASIC13.76□□□□□ -0.21
MSX2P35548 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.76□□□□□ -0.21
MSX2P35548 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.76□□□□□ -0.21
MSX2P35548 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX2P35548 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.76□□□□□ -0.21
MSX2P35548 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX2P35548 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 MIR8072-201ENST00000614241 80 ntBASIC13.76□□□□□ -0.21
MSX2P35548 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 PGM3-201ENST00000283977 2219 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 AC060814.4-201ENST00000594169 2163 ntBASIC13.76□□□□□ -0.21
MSX2P35548 AC115284.2-201ENST00000624646 2054 ntBASIC13.76□□□□□ -0.21
MSX2P35548 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC13.76□□□□□ -0.21
MSX2P35548 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX2P35548 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MSX2P35548 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC13.76□□□□□ -0.21
MSX2P35548 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
MSX2P35548 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
MSX2P35548 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 AMT-221ENST00000538581 2038 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
MSX2P35548 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 AC254562.1-201ENST00000417586 456 ntBASIC13.75□□□□□ -0.21
MSX2P35548 RPL13AP25-201ENST00000484130 612 ntBASIC13.75□□□□□ -0.21
MSX2P35548 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.75□□□□□ -0.21
MSX2P35548 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.75□□□□□ -0.21
MSX2P35548 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.75□□□□□ -0.21
MSX2P35548 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.75□□□□□ -0.21
MSX2P35548 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
MSX2P35548 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 AL390955.2-201ENST00000603032 514 ntBASIC13.75□□□□□ -0.21
MSX2P35548 AL603764.1-201ENST00000636452 321 ntBASIC13.75□□□□□ -0.21
MSX2P35548 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 ABL2-207ENST00000507173 3177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 TRPC7-202ENST00000378459 2406 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MSX2P35548 USO1-201ENST00000264904 4135 ntTSL 2 BASIC13.75□□□□□ -0.21
MSX2P35548 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC13.75□□□□□ -0.21
MSX2P35548 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX2P35548 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX2P35548 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms