Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC14.66□□□□□ -0.06
COL9A1P20849 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC14.66□□□□□ -0.06
COL9A1P20849 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.66□□□□□ -0.06
COL9A1P20849 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 KHSRPP1-201ENST00000427983 1768 ntBASIC14.65□□□□□ -0.06
COL9A1P20849 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 AIRN-202ENST00000609176 1489 ntTSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
COL9A1P20849 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 VKORC1-203ENST00000354895 901 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 TNNT2-207ENST00000367322 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 AL512328.1-203ENST00000428480 673 ntTSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC14.65□□□□□ -0.06
COL9A1P20849 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 AC003688.2-201ENST00000576271 415 ntTSL 3 BASIC14.65□□□□□ -0.06
COL9A1P20849 PSMG2-210ENST00000590217 1036 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 PRR20FP-201ENST00000603320 180 ntBASIC14.65□□□□□ -0.06
COL9A1P20849 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC14.65□□□□□ -0.06
COL9A1P20849 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
COL9A1P20849 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
COL9A1P20849 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 TEKT4P2-202ENST00000559466 1312 ntBASIC14.65□□□□□ -0.06
COL9A1P20849 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
COL9A1P20849 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.65□□□□□ -0.06
COL9A1P20849 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.65□□□□□ -0.07
COL9A1P20849 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 AC073347.1-201ENST00000421633 2643 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 AC015688.4-201ENST00000580780 1647 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 SMARCB1-203ENST00000407082 1182 ntTSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.64□□□□□ -0.07
COL9A1P20849 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 ST13P19-201ENST00000442505 1124 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 AP000533.1-201ENST00000456143 1177 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 RNU6-775P-201ENST00000459318 96 ntBASIC14.64□□□□□ -0.07
COL9A1P20849 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
COL9A1P20849 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.64□□□□□ -0.07
COL9A1P20849 AC099343.1-201ENST00000513481 609 ntBASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms