Protein–RNA interactions for Protein: Q96S21

RAB40C, Ras-related protein Rab-40C, humanhuman

Predictions only

Length 281 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40CQ96S21 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC11.73□□□□□ -0.53
RAB40CQ96S21 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 AL445209.1-201ENST00000607269 3491 ntBASIC11.73□□□□□ -0.53
RAB40CQ96S21 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
RAB40CQ96S21 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC11.73□□□□□ -0.53
RAB40CQ96S21 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 INTS4P2-202ENST00000614726 2019 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AC134915.1-201ENST00000426461 574 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 FO681548.1-201ENST00000455617 1132 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 FTH1-202ENST00000526640 786 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 BRI3BPP1-201ENST00000594224 787 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AC138696.2-201ENST00000607376 223 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 AL390754.1-201ENST00000619088 582 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 MVK-217ENST00000639206 367 ntTSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AGAP12P-201ENST00000585227 2359 ntBASIC11.72□□□□□ -0.53
RAB40CQ96S21 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 KIZ-213ENST00000620891 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC11.72□□□□□ -0.53
RAB40CQ96S21 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
RAB40CQ96S21 AL928654.5-201ENST00000624831 2501 ntBASIC11.71□□□□□ -0.53
RAB40CQ96S21 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RAB40CQ96S21 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
RAB40CQ96S21 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RAB40CQ96S21 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RAB40CQ96S21 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC11.71□□□□□ -0.53
RAB40CQ96S21 ABCD1P2-201ENST00000429313 1601 ntBASIC11.71□□□□□ -0.53
RAB40CQ96S21 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
RAB40CQ96S21 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms