Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 IGHJ2P-201ENST00000454480 60 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AKR7A2P1-201ENST00000460134 915 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 ARTN-209ENST00000479128 471 ntTSL 3 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AC020914.3-201ENST00000594712 304 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AC015967.2-201ENST00000624092 234 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AC006435.4-201ENST00000625037 234 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AL356737.1-201ENST00000634391 234 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 ST20-AS1-201ENST00000560255 4223 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 CCT8L1P-201ENST00000465400 1674 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 TUBBP5-203ENST00000508529 1334 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 TUBB8P4-201ENST00000511806 1324 ntBASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SCUBE3Q8IX30 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.02
SCUBE3Q8IX30 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 MYL10-201ENST00000223167 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AC092580.1-201ENST00000433998 658 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 RCC2P8-201ENST00000502779 1035 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AC079328.1-201ENST00000560358 952 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AC140658.4-201ENST00000561990 352 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AL645939.5-201ENST00000606834 243 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AL157813.1-201ENST00000612996 587 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AC067750.1-201ENST00000608826 6545 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 AL157996.1-201ENST00000624684 2299 ntBASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SCUBE3Q8IX30 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 TCAM1P-207ENST00000485295 1537 ntBASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
SCUBE3Q8IX30 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms