Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 FNTAP2-201ENST00000430308 634 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PTPA-217ENST00000434095 870 ntTSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 FTLP1-201ENST00000449155 526 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC020914.3-201ENST00000594712 304 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PRSS30P-206ENST00000641773 873 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC090505.1-201ENST00000430515 1834 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC016397.2-201ENST00000624848 1985 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 MST1P2-201ENST00000457982 2291 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC005252.3-201ENST00000623855 2258 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 AL158070.2-201ENST00000623713 1621 ntBASIC12.08□□□□□ -0.48
PDLIM3Q53GG5 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AL355864.2-201ENST00000447420 863 ntBASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 RHOA-206ENST00000454011 889 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AC091804.1-201ENST00000486888 567 ntBASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AC026410.3-201ENST00000514280 936 ntBASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 RARRES2P5-201ENST00000564013 466 ntBASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AC133539.2-201ENST00000604757 467 ntBASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AL008638.5-201ENST00000623814 1298 ntBASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.07□□□□□ -0.48
PDLIM3Q53GG5 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
PDLIM3Q53GG5 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms