Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC027307.3-201ENST00000594262 1100 ntBASIC13.93□□□□□ -0.18
FOXA1P55317 MIR6720-201ENST00000611664 98 ntBASIC13.93□□□□□ -0.18
FOXA1P55317 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
FOXA1P55317 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA1P55317 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA1P55317 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA1P55317 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC13.93□□□□□ -0.18
FOXA1P55317 LAP3P2-201ENST00000454686 1454 ntBASIC13.93□□□□□ -0.18
FOXA1P55317 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.93□□□□□ -0.18
FOXA1P55317 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
FOXA1P55317 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
FOXA1P55317 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.92□□□□□ -0.18
FOXA1P55317 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.92□□□□□ -0.18
FOXA1P55317 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 CROCCP4-201ENST00000457096 498 ntBASIC13.92□□□□□ -0.18
FOXA1P55317 AC100850.1-201ENST00000506768 649 ntBASIC13.92□□□□□ -0.18
FOXA1P55317 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.92□□□□□ -0.18
FOXA1P55317 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.92□□□□□ -0.18
FOXA1P55317 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 AC009955.4-201ENST00000597192 544 ntBASIC13.92□□□□□ -0.18
FOXA1P55317 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
FOXA1P55317 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 AL445209.1-201ENST00000607269 3491 ntBASIC13.92□□□□□ -0.18
FOXA1P55317 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.92□□□□□ -0.18
FOXA1P55317 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC13.92□□□□□ -0.18
FOXA1P55317 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
FOXA1P55317 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA1P55317 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
FOXA1P55317 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.91□□□□□ -0.18
FOXA1P55317 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.91□□□□□ -0.18
FOXA1P55317 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.91□□□□□ -0.18
FOXA1P55317 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
FOXA1P55317 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA1P55317 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.91□□□□□ -0.18
FOXA1P55317 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC13.91□□□□□ -0.18
FOXA1P55317 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.91□□□□□ -0.18
FOXA1P55317 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms