Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC011498.7-201ENST00000624986 2027 ntBASIC16.34■□□□□ 0.21
SCN4AP35499 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC16.34■□□□□ 0.21
SCN4AP35499 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC16.34■□□□□ 0.21
SCN4AP35499 RPSAP16-201ENST00000447583 821 ntBASIC16.34■□□□□ 0.21
SCN4AP35499 TRBV11-2-201ENST00000471935 408 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC16.34■□□□□ 0.21
SCN4AP35499 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
SCN4AP35499 MIR5193-201ENST00000584510 109 ntBASIC16.34■□□□□ 0.21
SCN4AP35499 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SCN4AP35499 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SCN4AP35499 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
SCN4AP35499 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
SCN4AP35499 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.34■□□□□ 0.21
SCN4AP35499 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SCN4AP35499 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SCN4AP35499 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SCN4AP35499 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.33■□□□□ 0.21
SCN4AP35499 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SCN4AP35499 AC092384.3-202ENST00000564646 2873 ntBASIC16.33■□□□□ 0.21
SCN4AP35499 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
SCN4AP35499 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC16.33■□□□□ 0.21
SCN4AP35499 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC16.33■□□□□ 0.21
SCN4AP35499 AL133351.2-201ENST00000437718 484 ntTSL 2 BASIC16.33■□□□□ 0.21
SCN4AP35499 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SCN4AP35499 YBX1P3-201ENST00000468366 909 ntBASIC16.33■□□□□ 0.21
SCN4AP35499 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC16.33■□□□□ 0.21
SCN4AP35499 Metazoa_SRP.147-201ENST00000576563 312 ntBASIC16.33■□□□□ 0.21
SCN4AP35499 RN7SL162P-201ENST00000579233 292 ntBASIC16.33■□□□□ 0.21
SCN4AP35499 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC16.33■□□□□ 0.21
SCN4AP35499 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC16.33■□□□□ 0.21
SCN4AP35499 AL078624.1-201ENST00000604004 547 ntBASIC16.33■□□□□ 0.21
SCN4AP35499 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
SCN4AP35499 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.21
SCN4AP35499 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SCN4AP35499 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
SCN4AP35499 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.33■□□□□ 0.21
SCN4AP35499 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.33■□□□□ 0.21
SCN4AP35499 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SCN4AP35499 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.33■□□□□ 0.2
SCN4AP35499 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 IFNAR2-201ENST00000342101 2606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 CES3-203ENST00000543856 3178 ntTSL 2 BASIC16.33■□□□□ 0.2
SCN4AP35499 AC022532.1-201ENST00000624563 1728 ntBASIC16.33■□□□□ 0.2
SCN4AP35499 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC16.33■□□□□ 0.2
SCN4AP35499 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC16.33■□□□□ 0.2
SCN4AP35499 HNRNPABP1-201ENST00000406003 734 ntBASIC16.33■□□□□ 0.2
SCN4AP35499 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC16.33■□□□□ 0.2
SCN4AP35499 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC16.33■□□□□ 0.2
SCN4AP35499 JPT1-205ENST00000470924 663 ntTSL 5 BASIC16.33■□□□□ 0.2
SCN4AP35499 RN7SL479P-201ENST00000472003 300 ntBASIC16.33■□□□□ 0.2
SCN4AP35499 MTHFD2P7-201ENST00000483867 983 ntBASIC16.33■□□□□ 0.2
SCN4AP35499 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC16.33■□□□□ 0.2
SCN4AP35499 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC16.33■□□□□ 0.2
SCN4AP35499 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC16.33■□□□□ 0.2
SCN4AP35499 AC022382.1-201ENST00000602768 336 ntBASIC16.33■□□□□ 0.2
SCN4AP35499 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC16.33■□□□□ 0.2
SCN4AP35499 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC16.33■□□□□ 0.2
SCN4AP35499 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
SCN4AP35499 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.33■□□□□ 0.2
SCN4AP35499 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 RBMX2P5-201ENST00000424312 969 ntBASIC16.32■□□□□ 0.2
SCN4AP35499 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC16.32■□□□□ 0.2
SCN4AP35499 SNORA47-201ENST00000458862 138 ntBASIC16.32■□□□□ 0.2
SCN4AP35499 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SCN4AP35499 LINC02352-201ENST00000557928 468 ntTSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC16.32■□□□□ 0.2
SCN4AP35499 AC092535.4-201ENST00000609548 397 ntBASIC16.32■□□□□ 0.2
SCN4AP35499 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 AC015912.3-201ENST00000619432 348 ntBASIC16.32■□□□□ 0.2
SCN4AP35499 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC16.32■□□□□ 0.2
SCN4AP35499 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SCN4AP35499 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms