Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
MSX1P28360 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
MSX1P28360 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
MSX1P28360 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.23□□□□□ -0.29
MSX1P28360 FTLP1-201ENST00000449155 526 ntBASIC13.23□□□□□ -0.29
MSX1P28360 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 AC024681.1-201ENST00000521917 487 ntBASIC13.23□□□□□ -0.29
MSX1P28360 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.23□□□□□ -0.29
MSX1P28360 AC134698.3-201ENST00000523880 214 ntBASIC13.23□□□□□ -0.29
MSX1P28360 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.23□□□□□ -0.29
MSX1P28360 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.23□□□□□ -0.29
MSX1P28360 AC124068.2-201ENST00000569473 1109 ntBASIC13.23□□□□□ -0.29
MSX1P28360 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.23□□□□□ -0.29
MSX1P28360 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.23□□□□□ -0.29
MSX1P28360 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 SPCS2P2-201ENST00000603270 608 ntBASIC13.23□□□□□ -0.29
MSX1P28360 AC026740.1-201ENST00000607068 791 ntBASIC13.23□□□□□ -0.29
MSX1P28360 AL353726.2-201ENST00000623259 884 ntBASIC13.23□□□□□ -0.29
MSX1P28360 AC068587.8-201ENST00000641239 219 ntBASIC13.23□□□□□ -0.29
MSX1P28360 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 MBLAC2-202ENST00000514906 1936 ntBASIC13.23□□□□□ -0.29
MSX1P28360 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC13.23□□□□□ -0.29
MSX1P28360 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 AC020910.6-201ENST00000623084 1459 ntBASIC13.23□□□□□ -0.29
MSX1P28360 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.23□□□□□ -0.29
MSX1P28360 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
MSX1P28360 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.22□□□□□ -0.29
MSX1P28360 PEG13-201ENST00000631594 5667 ntBASIC13.22□□□□□ -0.29
MSX1P28360 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 AC008132.1-202ENST00000342005 1389 ntBASIC13.22□□□□□ -0.29
MSX1P28360 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.22□□□□□ -0.29
MSX1P28360 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 MIR33B-201ENST00000385104 96 ntBASIC13.22□□□□□ -0.29
MSX1P28360 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.22□□□□□ -0.29
MSX1P28360 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 VDAC1P1-201ENST00000439229 848 ntBASIC13.22□□□□□ -0.29
MSX1P28360 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC13.22□□□□□ -0.29
MSX1P28360 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.22□□□□□ -0.29
MSX1P28360 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.22□□□□□ -0.29
MSX1P28360 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.22□□□□□ -0.29
MSX1P28360 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC13.22□□□□□ -0.29
MSX1P28360 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.22□□□□□ -0.29
MSX1P28360 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.22□□□□□ -0.29
MSX1P28360 MIR3907-201ENST00000579424 151 ntBASIC13.22□□□□□ -0.29
MSX1P28360 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 AC090164.2-201ENST00000611487 516 ntBASIC13.22□□□□□ -0.29
MSX1P28360 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.22□□□□□ -0.29
MSX1P28360 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.22□□□□□ -0.29
MSX1P28360 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
MSX1P28360 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
MSX1P28360 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms