Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
COL9A1P20849 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
COL9A1P20849 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
COL9A1P20849 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 MIR181D-201ENST00000384853 137 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 FTH1P18-201ENST00000412071 549 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 AC079325.1-201ENST00000430386 857 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 AC005534.1-201ENST00000455709 742 ntTSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 RPL18AP8-201ENST00000486071 528 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC14.67□□□□□ -0.06
COL9A1P20849 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.67□□□□□ -0.06
COL9A1P20849 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.67□□□□□ -0.06
COL9A1P20849 AC109466.1-206ENST00000522686 774 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 AC004923.3-201ENST00000527532 355 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 EEF1AKMT3-203ENST00000548256 561 ntTSL 4 BASIC14.67□□□□□ -0.06
COL9A1P20849 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC14.67□□□□□ -0.06
COL9A1P20849 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC14.67□□□□□ -0.06
COL9A1P20849 AL022334.2-201ENST00000610000 484 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 AC005746.3-201ENST00000614751 393 ntBASIC14.67□□□□□ -0.06
COL9A1P20849 AC093495.1-215ENST00000626655 821 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.67□□□□□ -0.06
COL9A1P20849 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC14.67□□□□□ -0.06
COL9A1P20849 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
COL9A1P20849 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
COL9A1P20849 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 OVCH1-AS1-204ENST00000641955 5529 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
COL9A1P20849 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.66□□□□□ -0.06
COL9A1P20849 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 AC000078.1-201ENST00000420617 682 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.66□□□□□ -0.06
COL9A1P20849 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC14.66□□□□□ -0.06
COL9A1P20849 AC018638.5-201ENST00000450885 754 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC14.66□□□□□ -0.06
COL9A1P20849 AC007679.1-201ENST00000458609 502 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 AC008494.1-201ENST00000497612 796 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 AC010834.3-201ENST00000520562 939 ntTSL 3 BASIC14.66□□□□□ -0.06
COL9A1P20849 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC14.66□□□□□ -0.06
COL9A1P20849 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 MIR4459-201ENST00000581837 66 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 AC132812.1-201ENST00000583145 892 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 PRMT1P1-201ENST00000604252 1009 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC14.66□□□□□ -0.06
COL9A1P20849 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
COL9A1P20849 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC14.66□□□□□ -0.06
COL9A1P20849 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC14.66□□□□□ -0.06
COL9A1P20849 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
COL9A1P20849 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms