Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 CD81-202ENST00000381036 880 ntTSL 3 BASIC11.18□□□□□ -0.62
CXCL1P09341 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC11.18□□□□□ -0.62
CXCL1P09341 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
CXCL1P09341 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC11.18□□□□□ -0.62
CXCL1P09341 AL079307.3-201ENST00000556114 283 ntBASIC11.18□□□□□ -0.62
CXCL1P09341 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 AC040169.1-201ENST00000565382 521 ntBASIC11.18□□□□□ -0.62
CXCL1P09341 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC11.18□□□□□ -0.62
CXCL1P09341 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC11.18□□□□□ -0.62
CXCL1P09341 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 AL354861.3-201ENST00000600140 2412 ntBASIC11.18□□□□□ -0.62
CXCL1P09341 LINC02486-201ENST00000604157 3000 ntBASIC11.18□□□□□ -0.62
CXCL1P09341 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 POTEI-203ENST00000631234 2072 ntTSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 ACSL4-202ENST00000348502 5032 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC11.18□□□□□ -0.62
CXCL1P09341 TJP2-206ENST00000453658 4129 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
CXCL1P09341 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 GADL1-201ENST00000282538 3759 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
CXCL1P09341 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
CXCL1P09341 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 MCF2L-213ENST00000421756 3560 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 ELN-216ENST00000429192 3298 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 RABGEF1-210ENST00000437078 4319 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 IL12RB1-207ENST00000600835 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC11.17□□□□□ -0.62
CXCL1P09341 ARPP21-213ENST00000428373 3150 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 CTNS-201ENST00000046640 2866 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 DYRK4-214ENST00000543431 2068 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 RPP21-221ENST00000428040 594 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC11.17□□□□□ -0.62
CXCL1P09341 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC11.17□□□□□ -0.62
CXCL1P09341 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 AC026150.2-201ENST00000564693 1156 ntBASIC11.17□□□□□ -0.62
CXCL1P09341 PIN1-206ENST00000587625 878 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 INO80C-210ENST00000590757 595 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC11.17□□□□□ -0.62
CXCL1P09341 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 ZNF180-201ENST00000221327 4335 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 MPP4-203ENST00000396886 2250 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 GBP1P1-201ENST00000394662 1740 ntBASIC11.17□□□□□ -0.62
CXCL1P09341 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 GPR176-201ENST00000299092 3844 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 DPYSL2-206ENST00000523027 2130 ntTSL 2 BASIC11.17□□□□□ -0.62
CXCL1P09341 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
CXCL1P09341 ADAMTSL4-202ENST00000369038 4167 ntAPPRIS P3 TSL 1 (best) BASIC11.17□□□□□ -0.62
CXCL1P09341 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.16□□□□□ -0.62
CXCL1P09341 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
CXCL1P09341 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms