Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AL583805.1-201ENST00000391389 531 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 DUTP3-201ENST00000450025 415 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AC234782.1-201ENST00000451950 919 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AP000358.1-201ENST00000456260 156 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AC005740.1-201ENST00000515639 522 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 LINC02486-201ENST00000604157 3000 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 AL590824.1-201ENST00000403828 1349 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.39□□□□□ -0.11
LHX3Q9UBR4 KRT8P24-201ENST00000560290 1559 ntBASIC14.39□□□□□ -0.11
LHX3Q9UBR4 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 KRT8P19-201ENST00000551916 1455 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 MIR645-201ENST00000385283 94 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 CHCHD2P2-201ENST00000503744 321 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 GOLGA2P8-201ENST00000505201 779 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 MIR3907-201ENST00000579424 151 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 RN7SL455P-201ENST00000580629 282 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AL021707.6-201ENST00000609212 491 ntBASIC14.38□□□□□ -0.11
LHX3Q9UBR4 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LHX3Q9UBR4 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms