Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AC024267.1-201ENST00000582320 895 ntBASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AC092364.2-202ENST00000597012 1073 ntBASIC8.87□□□□□ -0.99
LINC00643Q86TS7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 FHL2-212ENST00000607522 759 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 DPP9-201ENST00000262960 4295 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 TUBB8-204ENST00000564130 2438 ntTSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 SOX13-203ENST00000367204 3587 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CYP2D8P-201ENST00000433633 1490 ntBASIC8.87□□□□□ -0.99
LINC00643Q86TS7 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 LAMA5-201ENST00000252999 11426 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 GOLGA4-202ENST00000361924 7772 ntAPPRIS P3 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 GPR17-206ENST00000544369 2598 ntAPPRIS P1 TSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 SMARCA2-258ENST00000637103 5657 ntTSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 UTY-203ENST00000362096 4990 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 RAET1K-202ENST00000533735 1883 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 EMB-201ENST00000303221 4281 ntAPPRIS P2 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 AP2A1-201ENST00000354293 3388 ntAPPRIS ALT1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 PNPLA6-220ENST00000600737 4195 ntTSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 DCAKD-203ENST00000452796 2045 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 RALA-201ENST00000005257 2880 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 YLPM1-201ENST00000325680 7108 ntAPPRIS P2 TSL 5 BASIC8.87□□□□□ -0.99
LINC00643Q86TS7 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 SORBS3-201ENST00000240123 3459 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 DZIP1L-201ENST00000327532 3493 ntAPPRIS P3 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ZNF287-202ENST00000395825 3208 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ADCK1-202ENST00000341211 1972 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 XPC-201ENST00000285021 3832 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 KRT17P4-205ENST00000579946 2555 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PJA1-204ENST00000374584 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 TP53-208ENST00000504290 2331 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 TP53-220ENST00000610623 2331 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AC090136.3-201ENST00000520834 2704 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AL592490.1-201ENST00000409186 6347 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 WDR37-201ENST00000263150 4462 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 SPAG5-201ENST00000321765 4040 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 MIR663A-201ENST00000385250 93 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 RPS2P55-201ENST00000397318 883 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 RPS8P6-201ENST00000426177 609 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 GCSHP2-201ENST00000560971 527 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AL139424.1-201ENST00000607572 797 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AC080038.1-201ENST00000611274 1154 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 GGTLC5P-201ENST00000617623 998 ntBASIC8.86□□□□□ -0.99
LINC00643Q86TS7 KRI1-201ENST00000312962 3023 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PSEN1-202ENST00000357710 2776 ntAPPRIS ALT1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 CPT1C-217ENST00000598293 2767 ntAPPRIS P3 TSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 PCSK7-215ENST00000540028 3332 ntTSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AL136295.4-201ENST00000561419 4351 ntAPPRIS P1 TSL 2 BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 SYS1-201ENST00000243918 2862 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
LINC00643Q86TS7 AKR1B10-201ENST00000359579 1590 ntAPPRIS P1 TSL 1 (best) BASIC8.86□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms