Protein–RNA interactions for Protein: Q13635

PTCH1, Protein patched homolog 1, humanhuman

Predictions only

Length 1,447 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1Q13635 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC19.41■□□□□ 0.7
PTCH1Q13635 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC19.41■□□□□ 0.7
PTCH1Q13635 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PTCH1Q13635 AL353622.2-201ENST00000605846 425 ntBASIC19.41■□□□□ 0.7
PTCH1Q13635 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 TUBB8P4-201ENST00000511806 1324 ntBASIC19.41■□□□□ 0.7
PTCH1Q13635 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
PTCH1Q13635 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PTCH1Q13635 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCH1Q13635 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PTCH1Q13635 AL596257.1-201ENST00000641463 2694 ntBASIC19.4■□□□□ 0.7
PTCH1Q13635 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCH1Q13635 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCH1Q13635 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.4■□□□□ 0.7
PTCH1Q13635 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PTCH1Q13635 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 KRT18P33-201ENST00000398525 1043 ntBASIC19.4■□□□□ 0.7
PTCH1Q13635 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC19.4■□□□□ 0.7
PTCH1Q13635 BX322557.2-201ENST00000445242 379 ntTSL 3 BASIC19.4■□□□□ 0.7
PTCH1Q13635 AL136084.1-201ENST00000449172 318 ntBASIC19.4■□□□□ 0.7
PTCH1Q13635 AC112250.1-201ENST00000504640 745 ntBASIC19.4■□□□□ 0.7
PTCH1Q13635 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC19.4■□□□□ 0.7
PTCH1Q13635 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 KF455155.1-201ENST00000604493 303 ntBASIC19.4■□□□□ 0.7
PTCH1Q13635 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC19.4■□□□□ 0.7
PTCH1Q13635 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
PTCH1Q13635 Z98885.3-201ENST00000624882 1757 ntBASIC19.4■□□□□ 0.7
PTCH1Q13635 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PTCH1Q13635 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCH1Q13635 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC19.4■□□□□ 0.7
PTCH1Q13635 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PTCH1Q13635 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
PTCH1Q13635 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
PTCH1Q13635 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
PTCH1Q13635 CICP24-201ENST00000605464 2705 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PTCH1Q13635 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
PTCH1Q13635 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCH1Q13635 AL137244.1-201ENST00000422931 865 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 AL121987.1-201ENST00000435580 645 ntTSL 3 BASIC19.39■□□□□ 0.69
PTCH1Q13635 AC010900.1-201ENST00000449849 1296 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 RNU1-80P-201ENST00000459500 161 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC19.39■□□□□ 0.69
PTCH1Q13635 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCH1Q13635 CTBP2P6-201ENST00000526402 1229 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC19.39■□□□□ 0.69
PTCH1Q13635 AC091304.3-201ENST00000566500 716 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC19.39■□□□□ 0.69
PTCH1Q13635 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC19.39■□□□□ 0.69
PTCH1Q13635 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCH1Q13635 AC048382.6-201ENST00000621980 1223 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 AC110057.1-201ENST00000636031 898 ntBASIC19.39■□□□□ 0.69
PTCH1Q13635 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
PTCH1Q13635 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
PTCH1Q13635 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC19.39■□□□□ 0.69
PTCH1Q13635 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms