Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC10.23□□□□□ -0.77
RPL39P62891 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 VPS18-202ENST00000558474 873 ntTSL 3 BASIC10.23□□□□□ -0.77
RPL39P62891 MIR3687-2-201ENST00000577708 61 ntBASIC10.23□□□□□ -0.77
RPL39P62891 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC10.23□□□□□ -0.77
RPL39P62891 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 METTL23-205ENST00000588302 925 ntTSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC10.23□□□□□ -0.77
RPL39P62891 AC010327.4-202ENST00000591484 748 ntBASIC10.23□□□□□ -0.77
RPL39P62891 SRD5A3P1-201ENST00000603021 949 ntBASIC10.23□□□□□ -0.77
RPL39P62891 MIR3687-1-201ENST00000614492 61 ntBASIC10.23□□□□□ -0.77
RPL39P62891 AL136317.3-201ENST00000618497 906 ntBASIC10.23□□□□□ -0.77
RPL39P62891 AP001002.3-201ENST00000623482 206 ntBASIC10.23□□□□□ -0.77
RPL39P62891 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 AL603764.1-201ENST00000636452 321 ntBASIC10.23□□□□□ -0.77
RPL39P62891 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
RPL39P62891 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 AC102953.2-201ENST00000609755 3026 ntBASIC10.23□□□□□ -0.77
RPL39P62891 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 PCDHGA5-201ENST00000518069 4602 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC10.23□□□□□ -0.77
RPL39P62891 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
RPL39P62891 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
RPL39P62891 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
RPL39P62891 AL031719.1-201ENST00000623365 2587 ntBASIC10.22□□□□□ -0.77
RPL39P62891 AP000437.1-201ENST00000624057 2085 ntBASIC10.22□□□□□ -0.77
RPL39P62891 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 AL445250.1-201ENST00000641671 2259 ntBASIC10.22□□□□□ -0.77
RPL39P62891 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 F2-205ENST00000530231 1849 ntTSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC10.22□□□□□ -0.77
RPL39P62891 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC10.22□□□□□ -0.77
RPL39P62891 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 BAD-202ENST00000394531 631 ntTSL 3 BASIC10.22□□□□□ -0.77
RPL39P62891 WRB-204ENST00000398753 699 ntTSL 3 BASIC10.22□□□□□ -0.77
RPL39P62891 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 AC114812.1-204ENST00000449669 728 ntBASIC10.22□□□□□ -0.77
RPL39P62891 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC10.22□□□□□ -0.77
RPL39P62891 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 RN7SL399P-201ENST00000471648 279 ntBASIC10.22□□□□□ -0.77
RPL39P62891 AC109322.1-201ENST00000524499 1264 ntBASIC10.22□□□□□ -0.77
RPL39P62891 FTH1-202ENST00000526640 786 ntTSL 2 BASIC10.22□□□□□ -0.77
RPL39P62891 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 BAD-207ENST00000544785 525 ntTSL 3 BASIC10.22□□□□□ -0.77
RPL39P62891 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC10.22□□□□□ -0.77
RPL39P62891 RARRES2P5-201ENST00000564013 466 ntBASIC10.22□□□□□ -0.77
RPL39P62891 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC10.22□□□□□ -0.77
RPL39P62891 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
RPL39P62891 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms