Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 LAP3P2-201ENST00000454686 1454 ntBASIC15.07■□□□□ 0
HDAC4P56524 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
HDAC4P56524 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
HDAC4P56524 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.07■□□□□ 0
HDAC4P56524 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.06■□□□□ 0
HDAC4P56524 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 BEND3P1-201ENST00000421591 1944 ntBASIC15.06■□□□□ 0
HDAC4P56524 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.06■□□□□ 0
HDAC4P56524 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.06■□□□□ 0
HDAC4P56524 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC15.06■□□□□ 0
HDAC4P56524 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.06■□□□□ 0
HDAC4P56524 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 OR2R1P-201ENST00000441404 914 ntBASIC15.06■□□□□ 0
HDAC4P56524 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.06■□□□□ 0
HDAC4P56524 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.06■□□□□ 0
HDAC4P56524 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.06■□□□□ 0
HDAC4P56524 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.06■□□□□ 0
HDAC4P56524 MIR6752-201ENST00000618442 71 ntBASIC15.06■□□□□ 0
HDAC4P56524 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC15.06■□□□□ 0
HDAC4P56524 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC15.06■□□□□ 0
HDAC4P56524 KRT8P24-201ENST00000560290 1559 ntBASIC15.06■□□□□ 0
HDAC4P56524 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC15.06■□□□□ 0
HDAC4P56524 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC15.06■□□□□ 0
HDAC4P56524 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.06■□□□□ 0
HDAC4P56524 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ 0
HDAC4P56524 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.05■□□□□ 0
HDAC4P56524 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HDAC4P56524 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC15.05■□□□□ -0
HDAC4P56524 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC15.05■□□□□ -0
HDAC4P56524 AC104073.2-201ENST00000453737 312 ntBASIC15.05■□□□□ -0
HDAC4P56524 AC022217.1-201ENST00000521069 738 ntBASIC15.05■□□□□ -0
HDAC4P56524 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.05■□□□□ -0
HDAC4P56524 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.05■□□□□ -0
HDAC4P56524 PGAM1P5-201ENST00000548011 764 ntBASIC15.05■□□□□ -0
HDAC4P56524 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC15.05■□□□□ -0
HDAC4P56524 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.05■□□□□ -0
HDAC4P56524 AC021016.3-201ENST00000608367 477 ntBASIC15.05■□□□□ -0
HDAC4P56524 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.05■□□□□ -0
HDAC4P56524 AC068587.8-201ENST00000641239 219 ntBASIC15.05■□□□□ -0
HDAC4P56524 AC004923.1-202ENST00000642106 209 ntBASIC15.05■□□□□ -0
HDAC4P56524 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.05■□□□□ -0
HDAC4P56524 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.05■□□□□ -0
HDAC4P56524 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.05■□□□□ -0
HDAC4P56524 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC15.05■□□□□ -0
HDAC4P56524 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ -0
HDAC4P56524 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms