Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.92□□□□□ -0.02
PTPN9P43378 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 AC016700.1-201ENST00000429424 312 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC14.91□□□□□ -0.02
PTPN9P43378 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 AP001258.2-201ENST00000529891 490 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 AC093752.3-201ENST00000567343 901 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.91□□□□□ -0.02
PTPN9P43378 MIR4538-201ENST00000581377 78 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.91□□□□□ -0.02
PTPN9P43378 AC026740.1-201ENST00000607068 791 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.91□□□□□ -0.02
PTPN9P43378 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.91□□□□□ -0.02
PTPN9P43378 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 AGAP10P-201ENST00000454844 2418 ntBASIC14.91□□□□□ -0.02
PTPN9P43378 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTPN9P43378 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 RPL13AP3-202ENST00000494676 1473 ntBASIC14.9□□□□□ -0.02
PTPN9P43378 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PTPN9P43378 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PTPN9P43378 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 AC011742.3-201ENST00000439053 820 ntBASIC14.9□□□□□ -0.02
PTPN9P43378 AK2P2-201ENST00000439142 405 ntBASIC14.9□□□□□ -0.02
PTPN9P43378 RHEB-207ENST00000496004 744 ntTSL 2 BASIC14.9□□□□□ -0.02
PTPN9P43378 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms