Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
HLA-DMBP28068 SLC22A20-202ENST00000525437 3196 ntTSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
HLA-DMBP28068 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AC015712.2-202ENST00000560068 3213 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AC005014.1-201ENST00000432006 2976 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AL355864.2-201ENST00000447420 863 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 BCRP2-202ENST00000447763 634 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CROCCP4-201ENST00000457096 498 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 USP32P1-208ENST00000506594 1164 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 BCRP6-201ENST00000510112 632 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 BCRP7-201ENST00000511549 544 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 AP003171.2-201ENST00000528208 925 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 RPL28-206ENST00000558752 671 ntTSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AC106820.3-201ENST00000561653 397 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 APRT-204ENST00000563655 709 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 RN7SL48P-201ENST00000579283 293 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 MIR4683-201ENST00000579659 81 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 GNRHR2-203ENST00000581100 1187 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 BX088702.1-201ENST00000610784 235 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.05□□□□□ -0.64
HLA-DMBP28068 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC11.05□□□□□ -0.64
HLA-DMBP28068 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
HLA-DMBP28068 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
HLA-DMBP28068 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
HLA-DMBP28068 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC11.04□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms