Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
BDNFP23560 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 AL583805.1-201ENST00000391389 531 ntBASIC15.15■□□□□ 0.02
BDNFP23560 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
BDNFP23560 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 AL022313.4-201ENST00000562756 2046 ntBASIC15.15■□□□□ 0.02
BDNFP23560 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.15■□□□□ 0.02
BDNFP23560 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.15■□□□□ 0.02
BDNFP23560 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
BDNFP23560 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 AL359183.1-201ENST00000623796 2132 ntBASIC15.14■□□□□ 0.01
BDNFP23560 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
BDNFP23560 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
BDNFP23560 AL627231.1-201ENST00000394467 1125 ntBASIC15.14■□□□□ 0.01
BDNFP23560 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC15.14■□□□□ 0.01
BDNFP23560 AP000358.1-201ENST00000456260 156 ntBASIC15.14■□□□□ 0.01
BDNFP23560 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC15.14■□□□□ 0.01
BDNFP23560 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.14■□□□□ 0.01
BDNFP23560 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 KRT8P1-201ENST00000557533 1207 ntBASIC15.14■□□□□ 0.01
BDNFP23560 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 PRKXP1-201ENST00000561423 1122 ntBASIC15.14■□□□□ 0.01
BDNFP23560 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.14■□□□□ 0.01
BDNFP23560 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC15.14■□□□□ 0.01
BDNFP23560 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
BDNFP23560 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.14■□□□□ 0.01
BDNFP23560 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
BDNFP23560 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
BDNFP23560 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC15.13■□□□□ 0.01
BDNFP23560 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
BDNFP23560 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.13■□□□□ 0.01
BDNFP23560 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC15.13■□□□□ 0.01
BDNFP23560 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
BDNFP23560 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
BDNFP23560 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.13■□□□□ 0.01
BDNFP23560 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC15.13■□□□□ 0.01
BDNFP23560 OR8T1P-201ENST00000421347 918 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms