Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC14.74□□□□□ -0.05
HMGA1P17096 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
HMGA1P17096 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 AC025271.4-201ENST00000621477 1726 ntBASIC14.74□□□□□ -0.05
HMGA1P17096 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 AC138761.6-201ENST00000583997 1423 ntBASIC14.74□□□□□ -0.05
HMGA1P17096 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
HMGA1P17096 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
HMGA1P17096 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.74□□□□□ -0.05
HMGA1P17096 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 AC068760.1-201ENST00000493579 1953 ntBASIC14.73□□□□□ -0.05
HMGA1P17096 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGA1P17096 CICP16-201ENST00000502609 2813 ntBASIC14.73□□□□□ -0.05
HMGA1P17096 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGA1P17096 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC14.73□□□□□ -0.05
HMGA1P17096 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 AC092573.1-201ENST00000433054 884 ntBASIC14.73□□□□□ -0.05
HMGA1P17096 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 RNA5SP406-201ENST00000516106 112 ntBASIC14.73□□□□□ -0.05
HMGA1P17096 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGA1P17096 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.73□□□□□ -0.05
HMGA1P17096 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC14.73□□□□□ -0.05
HMGA1P17096 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 AP005264.5-201ENST00000590066 467 ntBASIC14.73□□□□□ -0.05
HMGA1P17096 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGA1P17096 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC14.73□□□□□ -0.05
HMGA1P17096 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
HMGA1P17096 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.73□□□□□ -0.05
HMGA1P17096 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
HMGA1P17096 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.72□□□□□ -0.05
HMGA1P17096 AC025183.3-201ENST00000623526 1482 ntBASIC14.72□□□□□ -0.05
HMGA1P17096 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
HMGA1P17096 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 BAK1P1-201ENST00000317045 636 ntBASIC14.72□□□□□ -0.05
HMGA1P17096 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC14.72□□□□□ -0.05
HMGA1P17096 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC14.72□□□□□ -0.05
HMGA1P17096 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.72□□□□□ -0.05
HMGA1P17096 RPL35P9-201ENST00000446059 350 ntBASIC14.72□□□□□ -0.05
HMGA1P17096 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC14.72□□□□□ -0.05
HMGA1P17096 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
HMGA1P17096 LINC00634-202ENST00000505157 222 ntBASIC14.72□□□□□ -0.05
HMGA1P17096 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.72□□□□□ -0.05
HMGA1P17096 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC14.72□□□□□ -0.05
HMGA1P17096 AC002044.2-201ENST00000624910 970 ntBASIC14.72□□□□□ -0.05
HMGA1P17096 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
HMGA1P17096 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms