Protein–RNA interactions for Protein: P13612

ITGA4, Integrin alpha-4, humanhuman

Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4P13612 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
ITGA4P13612 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 AC089987.1-201ENST00000551654 2209 ntBASIC15.82■□□□□ 0.12
ITGA4P13612 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
ITGA4P13612 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.81■□□□□ 0.12
ITGA4P13612 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 HINT2P1-201ENST00000419438 481 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC15.81■□□□□ 0.12
ITGA4P13612 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 MST1P2-201ENST00000457982 2291 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 IGLV3-15-201ENST00000518356 244 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.81■□□□□ 0.12
ITGA4P13612 AC003686.1-201ENST00000550956 1034 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.81■□□□□ 0.12
ITGA4P13612 MIR4754-201ENST00000582477 89 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 MIR3188-201ENST00000583494 85 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 AC011474.4-201ENST00000623523 2076 ntBASIC15.81■□□□□ 0.12
ITGA4P13612 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.81■□□□□ 0.12
ITGA4P13612 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
ITGA4P13612 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
ITGA4P13612 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
ITGA4P13612 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.8■□□□□ 0.12
ITGA4P13612 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 GGCT-203ENST00000409144 836 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 TSPY25P-201ENST00000429463 745 ntBASIC15.8■□□□□ 0.12
ITGA4P13612 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.8■□□□□ 0.12
ITGA4P13612 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 PGAM1P5-201ENST00000548011 764 ntBASIC15.8■□□□□ 0.12
ITGA4P13612 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.8■□□□□ 0.12
ITGA4P13612 MIR6769A-201ENST00000617340 73 ntBASIC15.8■□□□□ 0.12
ITGA4P13612 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
ITGA4P13612 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.8■□□□□ 0.12
ITGA4P13612 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
ITGA4P13612 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC15.8■□□□□ 0.12
ITGA4P13612 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
ITGA4P13612 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
ITGA4P13612 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms