Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 GPI-205ENST00000586425 1799 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 AL031673.1-201ENST00000611460 466 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A3P12111 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A3P12111 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL6A3P12111 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
COL6A3P12111 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
COL6A3P12111 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 LINC00115-201ENST00000473798 1317 ntBASIC14.33□□□□□ -0.12
COL6A3P12111 MED20-204ENST00000409312 932 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 CMTM1-206ENST00000457188 765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 EEF1GP2-201ENST00000509352 1243 ntBASIC14.33□□□□□ -0.12
COL6A3P12111 CMTM1-215ENST00000531885 590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 SNU13-204ENST00000402458 462 ntTSL 3 BASIC14.33□□□□□ -0.12
COL6A3P12111 FLNC-AS1-201ENST00000469965 559 ntTSL 4 BASIC14.33□□□□□ -0.12
COL6A3P12111 RPSAP5-201ENST00000485258 884 ntBASIC14.33□□□□□ -0.12
COL6A3P12111 MUTYH-236ENST00000529984 1029 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC14.33□□□□□ -0.12
COL6A3P12111 AL049871.1-201ENST00000557475 880 ntTSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 AC093072.1-201ENST00000589196 602 ntTSL 4 BASIC14.33□□□□□ -0.12
COL6A3P12111 AC010325.1-203ENST00000636757 380 ntAPPRIS P5 TSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.33□□□□□ -0.12
COL6A3P12111 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.33□□□□□ -0.12
COL6A3P12111 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
COL6A3P12111 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.33□□□□□ -0.12
COL6A3P12111 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 WFDC2-202ENST00000339946 420 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 WFDC2-204ENST00000372676 614 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 MBL3P-201ENST00000402234 644 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 RNA5SP407-201ENST00000410275 110 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 AC006987.4-201ENST00000430032 279 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 PRAMEF35P-201ENST00000458709 891 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL6A3P12111 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC14.32□□□□□ -0.12
COL6A3P12111 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A3P12111 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
COL6A3P12111 TNNT2-201ENST00000236918 1098 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
COL6A3P12111 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL6A3P12111 DIS3L2P1-201ENST00000509197 559 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 SLC25A5P6-201ENST00000515328 886 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 PEBP1P1-201ENST00000554856 510 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 AC009166.1-201ENST00000570060 487 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 SRP9-205ENST00000626563 329 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A3P12111 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 CDCA7L-202ENST00000373934 1830 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.32□□□□□ -0.12
COL6A3P12111 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 FAM90A22P-201ENST00000400142 1395 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 PGAM1P10-201ENST00000402426 761 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 ANO7-203ENST00000402530 894 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 AC007322.2-201ENST00000414540 605 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 PFN1P10-201ENST00000455962 327 ntBASIC14.32□□□□□ -0.12
COL6A3P12111 AL583824.1-203ENST00000457948 761 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC14.32□□□□□ -0.12
COL6A3P12111 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC14.32□□□□□ -0.12
COL6A3P12111 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
COL6A3P12111 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
COL6A3P12111 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.32□□□□□ -0.12
COL6A3P12111 AC015688.4-201ENST00000580780 1647 ntBASIC14.31□□□□□ -0.12
COL6A3P12111 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.31□□□□□ -0.12
COL6A3P12111 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms