Protein–RNA interactions for Protein: Q9Y2W7

KCNIP3, Calsenilin, humanhuman

Predictions only

Length 256 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3Q9Y2W7 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
KCNIP3Q9Y2W7 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
KCNIP3Q9Y2W7 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
KCNIP3Q9Y2W7 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
KCNIP3Q9Y2W7 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
KCNIP3Q9Y2W7 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC12.15□□□□□ -0.47
KCNIP3Q9Y2W7 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC12.15□□□□□ -0.47
KCNIP3Q9Y2W7 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
KCNIP3Q9Y2W7 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.47
KCNIP3Q9Y2W7 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 BIVM-ERCC5-205ENST00000639435 5632 ntAPPRIS P5 TSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AL118506.1-201ENST00000601296 3082 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 USP38-201ENST00000307017 7009 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AC106818.1-201ENST00000623223 3242 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 BCL2L13-214ENST00000543133 4975 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 BCL2L13-217ENST00000618481 4961 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 FAM86LP-201ENST00000478302 853 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 GIMAP3P-201ENST00000495150 836 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 MIR4469-201ENST00000583919 79 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 SPDYE12P-201ENST00000618416 771 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AC073592.8-201ENST00000624126 511 ntBASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 YTHDC1-201ENST00000344157 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
KCNIP3Q9Y2W7 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 SYNM-203ENST00000560674 5908 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 AC012349.1-201ENST00000518662 2643 ntTSL 2 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 DLEC1-201ENST00000308059 6426 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
KCNIP3Q9Y2W7 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms