Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 NLRP7-209ENST00000592784 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM55Q9BYV6 AC004899.2-201ENST00000622993 3860 ntBASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 HECTD1-219ENST00000611816 8980 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 HSPA8P5-201ENST00000456928 2069 ntBASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 RPL28-203ENST00000428193 573 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 RPL28-207ENST00000558815 616 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM55Q9BYV6 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 TP73-207ENST00000378290 1831 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 Z82170.1-201ENST00000625081 3192 ntBASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 AC083964.2-201ENST00000623988 2396 ntBASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM55Q9BYV6 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms