Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
USP39Q53GS9 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
USP39Q53GS9 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
USP39Q53GS9 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
USP39Q53GS9 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.68□□□□□ -0.06
USP39Q53GS9 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
USP39Q53GS9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
USP39Q53GS9 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.68□□□□□ -0.06
USP39Q53GS9 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
USP39Q53GS9 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC018442.1-201ENST00000421439 2061 ntBASIC14.67□□□□□ -0.06
USP39Q53GS9 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC018629.1-201ENST00000623381 1736 ntBASIC14.67□□□□□ -0.06
USP39Q53GS9 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
USP39Q53GS9 SOD2-202ENST00000367054 815 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC14.67□□□□□ -0.06
USP39Q53GS9 HNRNPA1P27-201ENST00000412087 955 ntBASIC14.67□□□□□ -0.06
USP39Q53GS9 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
USP39Q53GS9 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC018463.1-201ENST00000456674 917 ntBASIC14.67□□□□□ -0.06
USP39Q53GS9 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC023090.2-201ENST00000625182 2110 ntBASIC14.67□□□□□ -0.06
USP39Q53GS9 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.67□□□□□ -0.06
USP39Q53GS9 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
USP39Q53GS9 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.67□□□□□ -0.06
USP39Q53GS9 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
USP39Q53GS9 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 MIR557-201ENST00000385239 98 ntBASIC14.66□□□□□ -0.06
USP39Q53GS9 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.66□□□□□ -0.06
USP39Q53GS9 AC097065.1-201ENST00000425737 517 ntBASIC14.66□□□□□ -0.06
USP39Q53GS9 RPL13AP19-201ENST00000434320 584 ntBASIC14.66□□□□□ -0.06
USP39Q53GS9 AC012362.1-201ENST00000434906 739 ntBASIC14.66□□□□□ -0.06
USP39Q53GS9 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 IGHV3-37-201ENST00000518544 340 ntBASIC14.66□□□□□ -0.06
USP39Q53GS9 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.66□□□□□ -0.06
USP39Q53GS9 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC14.66□□□□□ -0.06
USP39Q53GS9 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.66□□□□□ -0.06
USP39Q53GS9 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC14.66□□□□□ -0.06
USP39Q53GS9 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC14.66□□□□□ -0.06
USP39Q53GS9 DDX5-235ENST00000630471 473 ntTSL 4 BASIC14.66□□□□□ -0.06
USP39Q53GS9 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.66□□□□□ -0.06
USP39Q53GS9 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
USP39Q53GS9 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
USP39Q53GS9 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms