Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CICP16-201ENST00000502609 2813 ntBASIC12.94□□□□□ -0.34
CLRN1P58418 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.94□□□□□ -0.34
CLRN1P58418 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
CLRN1P58418 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
CLRN1P58418 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.93□□□□□ -0.34
CLRN1P58418 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 PCDHA5-203ENST00000614258 4248 ntBASIC12.93□□□□□ -0.34
CLRN1P58418 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 FAM21FP-201ENST00000426241 1131 ntBASIC12.93□□□□□ -0.34
CLRN1P58418 KRT223P-202ENST00000449164 1292 ntBASIC12.93□□□□□ -0.34
CLRN1P58418 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.93□□□□□ -0.34
CLRN1P58418 EEF1DP1-201ENST00000585891 896 ntBASIC12.93□□□□□ -0.34
CLRN1P58418 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 AC011474.4-201ENST00000623523 2076 ntBASIC12.93□□□□□ -0.34
CLRN1P58418 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
CLRN1P58418 RIPOR1-204ENST00000428437 4152 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
CLRN1P58418 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 GBF1-201ENST00000369983 6403 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 REXO1L1P-201ENST00000379010 6598 ntBASIC12.93□□□□□ -0.34
CLRN1P58418 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CLRN1P58418 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 AC099336.1-201ENST00000417053 1171 ntBASIC12.92□□□□□ -0.34
CLRN1P58418 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC12.92□□□□□ -0.34
CLRN1P58418 FAM58BP-201ENST00000439056 645 ntBASIC12.92□□□□□ -0.34
CLRN1P58418 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC12.92□□□□□ -0.34
CLRN1P58418 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC12.92□□□□□ -0.34
CLRN1P58418 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 DRG2-220ENST00000583355 891 ntTSL 3 BASIC12.92□□□□□ -0.34
CLRN1P58418 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.92□□□□□ -0.34
CLRN1P58418 AC010328.2-201ENST00000597698 1111 ntBASIC12.92□□□□□ -0.34
CLRN1P58418 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC12.92□□□□□ -0.34
CLRN1P58418 AC009884.2-201ENST00000603110 324 ntBASIC12.92□□□□□ -0.34
CLRN1P58418 MIR6805-201ENST00000615055 62 ntBASIC12.92□□□□□ -0.34
CLRN1P58418 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.92□□□□□ -0.34
CLRN1P58418 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CLRN1P58418 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CLRN1P58418 MEX3B-202ENST00000558133 4333 ntBASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms