Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
MRE11P49959 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.93■□□□□ 0.3
MRE11P49959 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.93■□□□□ 0.3
MRE11P49959 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.93■□□□□ 0.3
MRE11P49959 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.93■□□□□ 0.3
MRE11P49959 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.93■□□□□ 0.3
MRE11P49959 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.93■□□□□ 0.3
MRE11P49959 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.93■□□□□ 0.3
MRE11P49959 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.93■□□□□ 0.3
MRE11P49959 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC16.93■□□□□ 0.3
MRE11P49959 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC16.93■□□□□ 0.3
MRE11P49959 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 KRT8P35-201ENST00000483942 1338 ntBASIC16.93■□□□□ 0.3
MRE11P49959 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC16.93■□□□□ 0.3
MRE11P49959 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
MRE11P49959 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC16.92■□□□□ 0.3
MRE11P49959 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 MEX3B-202ENST00000558133 4333 ntBASIC16.92■□□□□ 0.3
MRE11P49959 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
MRE11P49959 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
MRE11P49959 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.92■□□□□ 0.3
MRE11P49959 AC142381.1-201ENST00000426099 345 ntBASIC16.92■□□□□ 0.3
MRE11P49959 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 GNAQP1-201ENST00000444815 1067 ntBASIC16.92■□□□□ 0.3
MRE11P49959 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.92■□□□□ 0.3
MRE11P49959 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 AC009407.1-201ENST00000568958 598 ntBASIC16.92■□□□□ 0.3
MRE11P49959 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.92■□□□□ 0.3
MRE11P49959 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.92■□□□□ 0.3
MRE11P49959 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
MRE11P49959 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.92■□□□□ 0.3
MRE11P49959 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC16.92■□□□□ 0.3
MRE11P49959 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC16.92■□□□□ 0.3
MRE11P49959 ING4-201ENST00000341550 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 AP001972.5-201ENST00000624624 2338 ntBASIC16.92■□□□□ 0.3
MRE11P49959 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC16.92■□□□□ 0.3
MRE11P49959 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
MRE11P49959 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 AL731571.1-201ENST00000617058 5428 ntBASIC16.91■□□□□ 0.3
MRE11P49959 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
MRE11P49959 PIK3R3-203ENST00000420542 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC16.91■□□□□ 0.3
MRE11P49959 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 CARS-214ENST00000529772 2637 ntTSL 2 BASIC16.91■□□□□ 0.3
MRE11P49959 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC16.91■□□□□ 0.3
MRE11P49959 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC16.91■□□□□ 0.3
MRE11P49959 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
MRE11P49959 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC16.91■□□□□ 0.3
MRE11P49959 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 BOLA2P3-201ENST00000404566 256 ntBASIC16.91■□□□□ 0.3
MRE11P49959 AC253536.4-201ENST00000440539 267 ntBASIC16.91■□□□□ 0.3
MRE11P49959 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.91■□□□□ 0.3
MRE11P49959 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.91■□□□□ 0.3
MRE11P49959 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
MRE11P49959 AL355994.2-201ENST00000447882 704 ntBASIC16.91■□□□□ 0.3
MRE11P49959 LDHBP1-201ENST00000455730 1119 ntBASIC16.91■□□□□ 0.3
MRE11P49959 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms