Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 AC106818.1-201ENST00000623223 3242 ntBASIC15.3■□□□□ 0.04
LIG3P49916 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 COX11-210ENST00000639671 696 ntBASIC15.3■□□□□ 0.04
LIG3P49916 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC15.3■□□□□ 0.04
LIG3P49916 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LIG3P49916 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC15.3■□□□□ 0.04
LIG3P49916 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
LIG3P49916 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
LIG3P49916 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.29■□□□□ 0.04
LIG3P49916 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 MYRIP-204ENST00000444716 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 AC104457.1-201ENST00000401024 814 ntBASIC15.29■□□□□ 0.04
LIG3P49916 AL139094.1-201ENST00000405549 1188 ntBASIC15.29■□□□□ 0.04
LIG3P49916 C2orf27AP3-201ENST00000434123 579 ntBASIC15.29■□□□□ 0.04
LIG3P49916 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.29■□□□□ 0.04
LIG3P49916 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.29■□□□□ 0.04
LIG3P49916 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC15.29■□□□□ 0.04
LIG3P49916 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.29■□□□□ 0.04
LIG3P49916 AP005482.1-201ENST00000563722 1273 ntBASIC15.29■□□□□ 0.04
LIG3P49916 MIR4259-201ENST00000584466 101 ntBASIC15.29■□□□□ 0.04
LIG3P49916 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC15.29■□□□□ 0.04
LIG3P49916 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.29■□□□□ 0.04
LIG3P49916 AC244669.2-201ENST00000612320 853 ntBASIC15.29■□□□□ 0.04
LIG3P49916 AC133552.6-201ENST00000613406 534 ntBASIC15.29■□□□□ 0.04
LIG3P49916 AL354718.3-201ENST00000616414 581 ntBASIC15.29■□□□□ 0.04
LIG3P49916 CR382287.1-201ENST00000623954 586 ntBASIC15.29■□□□□ 0.04
LIG3P49916 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LIG3P49916 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LIG3P49916 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC15.29■□□□□ 0.04
LIG3P49916 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.28■□□□□ 0.04
LIG3P49916 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.28■□□□□ 0.04
LIG3P49916 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC15.28■□□□□ 0.04
LIG3P49916 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.28■□□□□ 0.04
LIG3P49916 ACTBP8-201ENST00000403258 1108 ntBASIC15.28■□□□□ 0.04
LIG3P49916 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.28■□□□□ 0.04
LIG3P49916 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 KRT223P-202ENST00000449164 1292 ntBASIC15.28■□□□□ 0.04
LIG3P49916 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
LIG3P49916 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.28■□□□□ 0.04
LIG3P49916 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.28■□□□□ 0.04
LIG3P49916 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.28■□□□□ 0.04
LIG3P49916 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.28■□□□□ 0.04
LIG3P49916 AC025279.2-201ENST00000569730 653 ntBASIC15.28■□□□□ 0.04
LIG3P49916 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 RPS15-205ENST00000586686 562 ntTSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 RPS15-208ENST00000591804 711 ntTSL 5 BASIC15.28■□□□□ 0.04
LIG3P49916 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LIG3P49916 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms