Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 RN7SKP214-201ENST00000364208 315 ntBASIC14.93□□□□□ -0.02
PTPN9P43378 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN9P43378 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN9P43378 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.93□□□□□ -0.02
PTPN9P43378 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.93□□□□□ -0.02
PTPN9P43378 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 AC092658.1-201ENST00000505836 891 ntBASIC14.93□□□□□ -0.02
PTPN9P43378 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.93□□□□□ -0.02
PTPN9P43378 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 MIR3615-201ENST00000581999 87 ntBASIC14.93□□□□□ -0.02
PTPN9P43378 AL645939.5-201ENST00000606834 243 ntBASIC14.93□□□□□ -0.02
PTPN9P43378 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
PTPN9P43378 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PTPN9P43378 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTPN9P43378 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
PTPN9P43378 AC023794.5-201ENST00000564380 2157 ntBASIC14.92□□□□□ -0.02
PTPN9P43378 LINC00115-201ENST00000473798 1317 ntBASIC14.92□□□□□ -0.02
PTPN9P43378 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 LINC01815-202ENST00000641468 1409 ntBASIC14.92□□□□□ -0.02
PTPN9P43378 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN9P43378 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
PTPN9P43378 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.92□□□□□ -0.02
PTPN9P43378 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN9P43378 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.92□□□□□ -0.02
PTPN9P43378 AC138649.2-201ENST00000615886 705 ntBASIC14.92□□□□□ -0.02
PTPN9P43378 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
PTPN9P43378 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 KRT8P21-201ENST00000430398 1491 ntBASIC14.92□□□□□ -0.02
PTPN9P43378 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN9P43378 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTPN9P43378 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.92□□□□□ -0.02
PTPN9P43378 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN9P43378 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.92□□□□□ -0.02
PTPN9P43378 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC14.92□□□□□ -0.02
PTPN9P43378 AL590824.1-201ENST00000403828 1349 ntBASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms