Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.27
BRCA1P38398 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 ADCK1-201ENST00000238561 2234 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
BRCA1P38398 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
BRCA1P38398 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
BRCA1P38398 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.27
BRCA1P38398 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 CEBPZOS-203ENST00000397226 1499 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 SLIRP-201ENST00000238688 394 ntAPPRIS P3 TSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 RNA5SP84-201ENST00000364740 107 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 PMF1-201ENST00000368273 884 ntTSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC16.76■□□□□ 0.27
BRCA1P38398 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
BRCA1P38398 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
BRCA1P38398 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.76■□□□□ 0.27
BRCA1P38398 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 LINC00554-201ENST00000564841 3011 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 RBMX2P5-201ENST00000424312 969 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC16.76■□□□□ 0.27
BRCA1P38398 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.76■□□□□ 0.27
BRCA1P38398 SNORA47-201ENST00000458862 138 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 AC105424.1-201ENST00000514583 209 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC16.76■□□□□ 0.27
BRCA1P38398 AC104759.1-201ENST00000559109 939 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC16.76■□□□□ 0.27
BRCA1P38398 KRT18P8-201ENST00000581937 1246 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC16.76■□□□□ 0.27
BRCA1P38398 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
BRCA1P38398 AC015912.3-201ENST00000619432 348 ntBASIC16.76■□□□□ 0.27
BRCA1P38398 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.76■□□□□ 0.27
BRCA1P38398 MINDY1-205ENST00000493834 1546 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
BRCA1P38398 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
BRCA1P38398 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 AC074019.1-201ENST00000428788 1096 ntBASIC16.75■□□□□ 0.27
BRCA1P38398 RBPMSLP-201ENST00000433427 502 ntBASIC16.75■□□□□ 0.27
BRCA1P38398 Z84721.1-201ENST00000438841 372 ntBASIC16.75■□□□□ 0.27
BRCA1P38398 HNRNPA1P3-201ENST00000440968 551 ntBASIC16.75■□□□□ 0.27
BRCA1P38398 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 FTH1-205ENST00000529631 507 ntTSL 4 BASIC16.75■□□□□ 0.27
BRCA1P38398 RN7SL162P-201ENST00000579233 292 ntBASIC16.75■□□□□ 0.27
BRCA1P38398 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
BRCA1P38398 MIR6165-201ENST00000614803 84 ntBASIC16.75■□□□□ 0.27
BRCA1P38398 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.75■□□□□ 0.27
BRCA1P38398 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
BRCA1P38398 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
BRCA1P38398 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
BRCA1P38398 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.74■□□□□ 0.27
BRCA1P38398 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
BRCA1P38398 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms