Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SCN4AP35499 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.39■□□□□ 0.21
SCN4AP35499 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 U3.41-201ENST00000408711 219 ntBASIC16.39■□□□□ 0.21
SCN4AP35499 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC16.39■□□□□ 0.21
SCN4AP35499 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC16.39■□□□□ 0.21
SCN4AP35499 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 DERL2-206ENST00000572834 589 ntTSL 3 BASIC16.39■□□□□ 0.21
SCN4AP35499 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 AC137723.2-201ENST00000623540 398 ntBASIC16.39■□□□□ 0.21
SCN4AP35499 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.39■□□□□ 0.21
SCN4AP35499 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 AL513477.1-201ENST00000602865 2407 ntBASIC16.39■□□□□ 0.21
SCN4AP35499 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
SCN4AP35499 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.39■□□□□ 0.21
SCN4AP35499 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SCN4AP35499 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC16.38■□□□□ 0.21
SCN4AP35499 HNRNPA1P3-201ENST00000440968 551 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 AP000439.2-201ENST00000542064 726 ntTSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC16.38■□□□□ 0.21
SCN4AP35499 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 BX510359.7-201ENST00000619819 630 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 KRT8P38-201ENST00000441370 1430 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SCN4AP35499 PPP1R2P10-201ENST00000393023 595 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC16.38■□□□□ 0.21
SCN4AP35499 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 RN7SL794P-201ENST00000469816 280 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 AC104212.2-201ENST00000478813 628 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 KRT18P42-201ENST00000505048 1255 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 AC103724.2-201ENST00000520355 476 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 RPL10P8-201ENST00000522888 313 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 COX14-204ENST00000550654 580 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC16.38■□□□□ 0.21
SCN4AP35499 AC133555.4-201ENST00000569081 152 ntBASIC16.38■□□□□ 0.21
SCN4AP35499 TRPC5OS-203ENST00000635763 955 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
SCN4AP35499 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC16.38■□□□□ 0.21
SCN4AP35499 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SCN4AP35499 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SCN4AP35499 AL031577.1-201ENST00000339867 399 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
SCN4AP35499 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC16.37■□□□□ 0.21
SCN4AP35499 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SCN4AP35499 RBPMSLP-201ENST00000433427 502 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC16.37■□□□□ 0.21
SCN4AP35499 ACTG1P23-201ENST00000437653 1074 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 AC069421.1-201ENST00000447462 323 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 RN7SL677P-201ENST00000466970 319 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 AC008021.1-201ENST00000474180 414 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 AC022447.6-201ENST00000515522 438 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC16.37■□□□□ 0.21
SCN4AP35499 AC091691.1-201ENST00000583587 1018 ntBASIC16.37■□□□□ 0.21
SCN4AP35499 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC16.37■□□□□ 0.21
SCN4AP35499 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 GABARAPL1-219ENST00000629504 379 ntTSL 4 BASIC16.37■□□□□ 0.21
SCN4AP35499 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SCN4AP35499 DLX4-206ENST00000611342 1662 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms