Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.26□□□□□ -0.29
MSX1P28360 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 AHCYP4-201ENST00000419201 1315 ntBASIC13.26□□□□□ -0.29
MSX1P28360 AC011742.3-201ENST00000439053 820 ntBASIC13.26□□□□□ -0.29
MSX1P28360 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC13.26□□□□□ -0.29
MSX1P28360 RPS2P36-201ENST00000456516 831 ntBASIC13.26□□□□□ -0.29
MSX1P28360 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.26□□□□□ -0.29
MSX1P28360 AC106794.1-201ENST00000506935 792 ntBASIC13.26□□□□□ -0.29
MSX1P28360 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 HPD-204ENST00000543163 1709 ntTSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC13.26□□□□□ -0.29
MSX1P28360 RN7SL774P-201ENST00000577467 290 ntBASIC13.26□□□□□ -0.29
MSX1P28360 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.26□□□□□ -0.29
MSX1P28360 AC005962.1-201ENST00000584100 773 ntBASIC13.26□□□□□ -0.29
MSX1P28360 LINC01837-201ENST00000590021 1320 ntTSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
MSX1P28360 AP001442.1-203ENST00000596385 876 ntTSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 AL645939.5-201ENST00000606834 243 ntBASIC13.26□□□□□ -0.29
MSX1P28360 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 AC007191.1-201ENST00000623179 2995 ntBASIC13.26□□□□□ -0.29
MSX1P28360 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 AC128714.1-201ENST00000637035 887 ntBASIC13.26□□□□□ -0.29
MSX1P28360 AC004923.1-202ENST00000642106 209 ntBASIC13.26□□□□□ -0.29
MSX1P28360 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 AC015656.1-201ENST00000624209 3578 ntBASIC13.26□□□□□ -0.29
MSX1P28360 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
MSX1P28360 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
MSX1P28360 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
MSX1P28360 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 USP4-203ENST00000415188 1454 ntTSL 3 BASIC13.25□□□□□ -0.29
MSX1P28360 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.25□□□□□ -0.29
MSX1P28360 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.25□□□□□ -0.29
MSX1P28360 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
MSX1P28360 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.25□□□□□ -0.29
MSX1P28360 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.25□□□□□ -0.29
MSX1P28360 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 RNMTL1P1-201ENST00000454103 560 ntBASIC13.25□□□□□ -0.29
MSX1P28360 RPL18P13-201ENST00000478088 569 ntBASIC13.25□□□□□ -0.29
MSX1P28360 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 AC006122.1-201ENST00000493323 440 ntBASIC13.25□□□□□ -0.29
MSX1P28360 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.25□□□□□ -0.29
MSX1P28360 AC013355.1-201ENST00000562625 723 ntBASIC13.25□□□□□ -0.29
MSX1P28360 FGFR3P5-201ENST00000564496 886 ntBASIC13.25□□□□□ -0.29
MSX1P28360 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 AC008805.1-201ENST00000590892 364 ntBASIC13.25□□□□□ -0.29
MSX1P28360 AC137695.1-201ENST00000604126 489 ntBASIC13.25□□□□□ -0.29
MSX1P28360 AC021016.3-201ENST00000608367 477 ntBASIC13.25□□□□□ -0.29
MSX1P28360 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.25□□□□□ -0.29
MSX1P28360 AC022748.3-201ENST00000621828 275 ntBASIC13.25□□□□□ -0.29
MSX1P28360 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.25□□□□□ -0.29
MSX1P28360 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
MSX1P28360 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC13.25□□□□□ -0.29
MSX1P28360 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms