Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 NME6-203ENST00000415644 849 ntTSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 ALG3P1-201ENST00000508806 1114 ntBASIC14.25□□□□□ -0.13
CDH3P22223 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 AC020914.3-201ENST00000594712 304 ntBASIC14.25□□□□□ -0.13
CDH3P22223 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 AL731571.1-201ENST00000617058 5428 ntBASIC14.25□□□□□ -0.13
CDH3P22223 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.25□□□□□ -0.13
CDH3P22223 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CDH3P22223 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CDH3P22223 AC092135.3-201ENST00000624151 1846 ntBASIC14.25□□□□□ -0.13
CDH3P22223 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
CDH3P22223 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.24□□□□□ -0.13
CDH3P22223 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.24□□□□□ -0.13
CDH3P22223 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 RBM38-204ENST00000371219 760 ntTSL 2 BASIC14.24□□□□□ -0.13
CDH3P22223 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 PUDPP3-201ENST00000445368 636 ntBASIC14.24□□□□□ -0.13
CDH3P22223 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.24□□□□□ -0.13
CDH3P22223 RNMTL1P1-201ENST00000454103 560 ntBASIC14.24□□□□□ -0.13
CDH3P22223 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.24□□□□□ -0.13
CDH3P22223 TUBB8P8-201ENST00000458717 1058 ntBASIC14.24□□□□□ -0.13
CDH3P22223 SERPINA13P-202ENST00000478994 924 ntBASIC14.24□□□□□ -0.13
CDH3P22223 AC091804.1-201ENST00000486888 567 ntBASIC14.24□□□□□ -0.13
CDH3P22223 ZNF767P-206ENST00000513792 565 ntBASIC14.24□□□□□ -0.13
CDH3P22223 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.24□□□□□ -0.13
CDH3P22223 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC14.24□□□□□ -0.13
CDH3P22223 BX088702.1-201ENST00000610784 235 ntBASIC14.24□□□□□ -0.13
CDH3P22223 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.24□□□□□ -0.13
CDH3P22223 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC14.24□□□□□ -0.13
CDH3P22223 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.24□□□□□ -0.13
CDH3P22223 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CDH3P22223 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
CDH3P22223 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CDH3P22223 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 COLGALT1-201ENST00000252599 3704 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.24□□□□□ -0.13
CDH3P22223 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CDH3P22223 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms