Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CD44-224ENST00000526669 870 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
COL6A3P12111 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A3P12111 PMF1-201ENST00000368273 884 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A3P12111 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
COL6A3P12111 ALDOAP2-201ENST00000398050 1076 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 AC105443.1-201ENST00000433754 712 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 snoZ6.3-201ENST00000583496 76 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 AL109954.3-201ENST00000615088 558 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A3P12111 Z82244.1-201ENST00000631502 840 ntBASIC14.36□□□□□ -0.11
COL6A3P12111 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A3P12111 AC091951.1-201ENST00000512854 2465 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 RNF141-202ENST00000528665 1374 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 AC112693.3-201ENST00000624819 1983 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 TPI1P3-201ENST00000335020 740 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 SDCBP2P1-201ENST00000416115 614 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 EEF1GP3-201ENST00000421044 1288 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 RRNAD1-211ENST00000524343 459 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A3P12111 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A3P12111 RN7SL750P-201ENST00000582814 238 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A3P12111 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 AC124319.4-201ENST00000622931 2161 ntBASIC14.35□□□□□ -0.11
COL6A3P12111 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 CD300LB-201ENST00000314401 993 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 AC022634.2-201ENST00000521504 382 ntTSL 3 BASIC14.35□□□□□ -0.11
COL6A3P12111 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC14.35□□□□□ -0.11
COL6A3P12111 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
COL6A3P12111 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A3P12111 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL6A3P12111 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 RNASE11-201ENST00000398008 872 ntAPPRIS P2 TSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 AC098591.1-202ENST00000507914 937 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 AC104759.1-201ENST00000559109 939 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 AC134312.5-202ENST00000562705 756 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 AC092535.4-201ENST00000609548 397 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 AC018529.2-202ENST00000611482 3087 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 AC089987.2-201ENST00000328207 936 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 FCER1A-201ENST00000368114 765 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 AC104333.3-201ENST00000449334 479 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 RPL18P1-201ENST00000497218 552 ntBASIC14.34□□□□□ -0.11
COL6A3P12111 AC006547.1-206ENST00000600617 878 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 PTPRT-212ENST00000620410 940 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 USP8-219ENST00000625664 1568 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A3P12111 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 HSPB11-204ENST00000371378 894 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 TXN2-204ENST00000416967 1280 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A3P12111 AC092100.1-201ENST00000435148 702 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 SNHG11-211ENST00000444816 621 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 AC074366.1-204ENST00000446277 552 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A3P12111 SNHG11-214ENST00000457218 880 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A3P12111 AP3M2-205ENST00000517922 1094 ntTSL 2 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms