Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC078875.1-201ENST00000431907 724 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 EEF1DP6-201ENST00000449232 372 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 AC012618.1-201ENST00000461223 412 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 NUP210P1-202ENST00000504322 710 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC13.17□□□□□ -0.3
HOXD4P09016 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 U62317.3-201ENST00000608319 855 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.17□□□□□ -0.3
HOXD4P09016 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 Z98259.2-201ENST00000641583 609 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.17□□□□□ -0.3
HOXD4P09016 SBF1P1-201ENST00000444527 5631 ntBASIC13.17□□□□□ -0.3
HOXD4P09016 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
HOXD4P09016 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
HOXD4P09016 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
HOXD4P09016 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 AC092135.3-201ENST00000624151 1846 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
HOXD4P09016 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 AL157407.1-201ENST00000435784 904 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 VDAC1P1-201ENST00000439229 848 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXD4P09016 AL596276.2-201ENST00000447525 331 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 RCC2P8-201ENST00000502779 1035 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.16□□□□□ -0.3
HOXD4P09016 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 AL160314.3-201ENST00000556041 767 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 AL353770.1-201ENST00000614915 403 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 MIR7845-201ENST00000618396 99 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 FAM90A7P-201ENST00000382628 1395 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 FAM90A23P-201ENST00000400136 1395 ntBASIC13.16□□□□□ -0.3
HOXD4P09016 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC13.16□□□□□ -0.3
HOXD4P09016 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
HOXD4P09016 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HOXD4P09016 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
HOXD4P09016 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
HOXD4P09016 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.16□□□□□ -0.3
HOXD4P09016 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
HOXD4P09016 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXD4P09016 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC13.15□□□□□ -0.3
HOXD4P09016 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.15□□□□□ -0.3
HOXD4P09016 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
HOXD4P09016 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
HOXD4P09016 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms