Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
SPTA1P02549 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SPTA1P02549 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 CELP-201ENST00000411440 1249 ntTSL 5 BASIC13.01□□□□□ -0.33
SPTA1P02549 OR52M2P-201ENST00000414298 959 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 AHCYP3-201ENST00000420053 1279 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 AC027612.2-202ENST00000445955 1199 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 AC092896.1-201ENST00000465850 380 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC13.01□□□□□ -0.33
SPTA1P02549 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 ABHD17AP9-201ENST00000561925 548 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 AC006116.2-201ENST00000589958 988 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC13.01□□□□□ -0.33
SPTA1P02549 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SPTA1P02549 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC13.01□□□□□ -0.33
SPTA1P02549 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 AC117503.4-201ENST00000623229 1418 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
SPTA1P02549 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.01□□□□□ -0.33
SPTA1P02549 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
SPTA1P02549 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.01□□□□□ -0.33
SPTA1P02549 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
SPTA1P02549 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
SPTA1P02549 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 AC106827.1-201ENST00000366454 431 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC13.01□□□□□ -0.33
SPTA1P02549 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC13.01□□□□□ -0.33
SPTA1P02549 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC13.01□□□□□ -0.33
SPTA1P02549 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC13.01□□□□□ -0.33
SPTA1P02549 AC090386.2-201ENST00000623010 1039 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC13.01□□□□□ -0.33
SPTA1P02549 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
SPTA1P02549 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 SSR4P1-203ENST00000599569 2260 ntBASIC13.01□□□□□ -0.33
SPTA1P02549 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
SPTA1P02549 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
SPTA1P02549 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
SPTA1P02549 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 PCDHA1-201ENST00000378133 2726 ntBASIC13□□□□□ -0.33
SPTA1P02549 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13□□□□□ -0.33
SPTA1P02549 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 AL356000.1-201ENST00000441073 1238 ntBASIC13□□□□□ -0.33
SPTA1P02549 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 HINT1-205ENST00000508488 703 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13□□□□□ -0.33
SPTA1P02549 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
SPTA1P02549 AC067931.2-201ENST00000623655 2003 ntBASIC13□□□□□ -0.33
SPTA1P02549 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13□□□□□ -0.33
SPTA1P02549 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC13□□□□□ -0.33
SPTA1P02549 AL590440.2-201ENST00000641973 1595 ntBASIC13□□□□□ -0.33
SPTA1P02549 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13□□□□□ -0.33
SPTA1P02549 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC13□□□□□ -0.33
SPTA1P02549 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
SPTA1P02549 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
SPTA1P02549 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms