Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 KRT17P8-201ENST00000540749 863 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AC112187.3-201ENST00000607844 408 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AC104506.1-201ENST00000609247 429 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AL117339.1-201ENST00000419779 428 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AL445228.1-201ENST00000449525 333 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 RAB43P1-201ENST00000561790 589 ntBASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 DUX4L46-201ENST00000566845 751 ntBASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AC024267.5-201ENST00000579154 599 ntBASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 AC080188.3-201ENST00000624842 748 ntBASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 HSPA8P5-201ENST00000456928 2069 ntBASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
VPS9D1Q9Y2B5 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
VPS9D1Q9Y2B5 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms