Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
UPF3BQ9BZI7 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 BOLA2P3-201ENST00000404566 256 ntBASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 BCYRN1-201ENST00000418539 200 ntBASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 CNN2P10-201ENST00000443067 918 ntBASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 MIR6787-201ENST00000616675 61 ntBASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
UPF3BQ9BZI7 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
UPF3BQ9BZI7 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 CROT-203ENST00000419147 2959 ntTSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 STK3-218ENST00000617590 2485 ntTSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 AC026954.1-201ENST00000429771 1293 ntBASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 AL035414.1-201ENST00000451327 857 ntBASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
UPF3BQ9BZI7 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 AL928654.5-201ENST00000624831 2501 ntBASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 APP-205ENST00000358918 2366 ntTSL 5 BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
UPF3BQ9BZI7 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms