Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 GPR161-209ENST00000539777 7655 ntTSL 2 BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
CCDC54Q8NEL0 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 GALC-206ENST00000544807 2528 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 AC005229.1-201ENST00000392885 409 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 AL391280.1-201ENST00000506969 1062 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 RNA5SP486-201ENST00000515961 83 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 RN7SL204P-201ENST00000582831 262 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 AC015936.2-201ENST00000593177 259 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 AC002472.3-201ENST00000640124 621 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 KRT8P28-201ENST00000433288 1390 ntBASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 DDC-213ENST00000617822 1809 ntTSL 3 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CCDC54Q8NEL0 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 BCL2L11-221ENST00000621302 5224 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 BCL2L11-222ENST00000622509 5231 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC020910.5-201ENST00000623668 1865 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AP006294.1-201ENST00000415407 339 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 GOLGA6L11P-201ENST00000417252 1298 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 GAS5-209ENST00000430245 723 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 FAM8A4P-201ENST00000435433 1213 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC002472.2-201ENST00000442739 958 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 TERF1P3-201ENST00000505638 1227 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC190387.1-201ENST00000551683 408 ntBASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 RPL28-206ENST00000558752 671 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC12.66□□□□□ -0.38
CCDC54Q8NEL0 AC010319.3-201ENST00000597028 470 ntBASIC12.66□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms