Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 NRADDP-201ENST00000437305 691 ntBASIC11.6□□□□□ -0.55
VPS13CQ709C8 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 CD44-224ENST00000526669 870 ntTSL 5 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 SCGB1A1-202ENST00000534397 466 ntTSL 3 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 NAT9-219ENST00000582524 573 ntTSL 4 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
VPS13CQ709C8 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
VPS13CQ709C8 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 SRP14-208ENST00000560773 468 ntTSL 3 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC116025.1-201ENST00000575404 415 ntTSL 3 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 TYMSP2-201ENST00000589501 424 ntBASIC11.59□□□□□ -0.55
VPS13CQ709C8 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
VPS13CQ709C8 AC023824.1-201ENST00000562945 2975 ntBASIC11.59□□□□□ -0.55
VPS13CQ709C8 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
VPS13CQ709C8 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
VPS13CQ709C8 AIG1-203ENST00000367596 559 ntTSL 2 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.55
VPS13CQ709C8 DKKL1P1-201ENST00000400550 698 ntBASIC11.58□□□□□ -0.55
VPS13CQ709C8 LINC01833-204ENST00000444871 581 ntTSL 3 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 VDAC1P11-201ENST00000458323 852 ntBASIC11.58□□□□□ -0.55
VPS13CQ709C8 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 MBP-230ENST00000528160 584 ntTSL 5 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 SLC25A3-206ENST00000547534 556 ntTSL 2 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
VPS13CQ709C8 RPL13AP3-202ENST00000494676 1473 ntBASIC11.58□□□□□ -0.55
VPS13CQ709C8 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC11.58□□□□□ -0.55
VPS13CQ709C8 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
VPS13CQ709C8 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC11.58□□□□□ -0.55
VPS13CQ709C8 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
VPS13CQ709C8 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
VPS13CQ709C8 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
VPS13CQ709C8 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 USP39-207ENST00000450066 2086 ntTSL 2 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
VPS13CQ709C8 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
VPS13CQ709C8 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
VPS13CQ709C8 GH1-203ENST00000351388 685 ntTSL 2 BASIC11.58□□□□□ -0.56
VPS13CQ709C8 RPL10-203ENST00000406022 748 ntTSL 3 BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms