Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 SCARNA21-201ENST00000517026 139 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 IGLV3-15-201ENST00000518356 244 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC242376.1-201ENST00000559033 726 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC005962.1-201ENST00000584100 773 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 MIR7845-201ENST00000618396 99 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 Z98259.2-201ENST00000641583 609 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC012617.1-204ENST00000586340 2305 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 AC003102.2-201ENST00000589195 1469 ntBASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC16.77■□□□□ 0.28
CCDC144BQ3MJ40 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 TCAF1P1-201ENST00000414990 2232 ntBASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC144BQ3MJ40 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC092978.1-202ENST00000637590 1327 ntBASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 CICP16-201ENST00000502609 2813 ntBASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 IGF1-203ENST00000392904 761 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC073150.1-201ENST00000450406 1084 ntBASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC018635.2-201ENST00000608625 364 ntBASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC006453.1-201ENST00000636037 1257 ntBASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC144BQ3MJ40 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms