Protein–RNA interactions for Protein: P43005

SLC1A1, Excitatory amino acid transporter 3, humanhuman

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC1A1P43005 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.12■□□□□ 0.01
SLC1A1P43005 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
SLC1A1P43005 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
SLC1A1P43005 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 NME2P1-201ENST00000426182 414 ntBASIC15.11■□□□□ 0.01
SLC1A1P43005 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC1A1P43005 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
SLC1A1P43005 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC1A1P43005 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 NCLP1-201ENST00000445357 1963 ntBASIC15.11■□□□□ 0.01
SLC1A1P43005 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.11■□□□□ 0.01
SLC1A1P43005 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC1A1P43005 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.11■□□□□ 0.01
SLC1A1P43005 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
SLC1A1P43005 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SLC1A1P43005 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 USP39-207ENST00000450066 2086 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC1A1P43005 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
SLC1A1P43005 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SLC1A1P43005 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 AC244394.1-201ENST00000435000 1665 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SLC1A1P43005 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.1■□□□□ 0.01
SLC1A1P43005 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC15.1■□□□□ 0.01
SLC1A1P43005 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC15.1■□□□□ 0.01
SLC1A1P43005 AL512310.5-201ENST00000551999 515 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.1■□□□□ 0.01
SLC1A1P43005 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 AP006547.1-201ENST00000563435 692 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC15.1■□□□□ 0.01
SLC1A1P43005 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.1■□□□□ 0.01
SLC1A1P43005 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 AC009884.2-201ENST00000603110 324 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 AC090386.2-201ENST00000623010 1039 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 PDIA3P1-201ENST00000471856 1510 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SLC1A1P43005 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SLC1A1P43005 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 GOLGA8IP-202ENST00000611635 2100 ntBASIC15.1■□□□□ 0.01
SLC1A1P43005 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SLC1A1P43005 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC1A1P43005 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.09■□□□□ 0.01
SLC1A1P43005 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SLC1A1P43005 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms