Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.86□□□□□ -0.19
PDLIM1O00151 AC026992.2-203ENST00000563004 2419 ntBASIC13.86□□□□□ -0.19
PDLIM1O00151 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.86□□□□□ -0.19
PDLIM1O00151 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.86□□□□□ -0.19
PDLIM1O00151 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
PDLIM1O00151 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 GOLGA8IP-202ENST00000611635 2100 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 AC215219.1-201ENST00000400706 1817 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 DLX4-206ENST00000611342 1662 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 SLC7A15P-201ENST00000424028 1363 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 AL391825.1-201ENST00000457671 1364 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
PDLIM1O00151 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC13.85□□□□□ -0.19
PDLIM1O00151 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 AL353779.1-201ENST00000434793 351 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.85□□□□□ -0.19
PDLIM1O00151 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 TPRX2P-201ENST00000535362 881 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC13.85□□□□□ -0.19
PDLIM1O00151 AC190387.1-201ENST00000551683 408 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.85□□□□□ -0.19
PDLIM1O00151 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
PDLIM1O00151 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.85□□□□□ -0.19
PDLIM1O00151 RARRES2P5-201ENST00000564013 466 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 AL132655.2-201ENST00000596276 594 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC13.85□□□□□ -0.19
PDLIM1O00151 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 AL158212.4-201ENST00000624062 1286 ntBASIC13.85□□□□□ -0.19
PDLIM1O00151 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC13.85□□□□□ -0.19
PDLIM1O00151 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
PDLIM1O00151 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
PDLIM1O00151 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 TMEM229B-207ENST00000557006 3941 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
PDLIM1O00151 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.85□□□□□ -0.19
PDLIM1O00151 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
PDLIM1O00151 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC13.84□□□□□ -0.19
PDLIM1O00151 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.84□□□□□ -0.19
PDLIM1O00151 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
PDLIM1O00151 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.84□□□□□ -0.19
PDLIM1O00151 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC13.84□□□□□ -0.19
PDLIM1O00151 AL035633.1-201ENST00000406139 838 ntBASIC13.84□□□□□ -0.19
PDLIM1O00151 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.84□□□□□ -0.19
PDLIM1O00151 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.84□□□□□ -0.19
PDLIM1O00151 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PDLIM1O00151 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PDLIM1O00151 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms