Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR326-201ENST00000362220 95 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 USP17L6P-201ENST00000382470 1197 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 MIR1202-201ENST00000408529 83 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AC112492.5-201ENST00000421897 457 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AP000812.2-201ENST00000538934 718 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AL136301.1-201ENST00000615830 422 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 RHOXF1P1-202ENST00000635473 501 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 ADCYAP1R1-207ENST00000614107 6575 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 AL157996.1-201ENST00000624684 2299 ntBASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HIF3AQ9Y2N7 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
HIF3AQ9Y2N7 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AC089987.1-201ENST00000551654 2209 ntBASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 CNN2P10-201ENST00000443067 918 ntBASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HIF3AQ9Y2N7 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms