Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 PMS2P4-201ENST00000412466 1052 ntBASIC8.91□□□□□ -0.98
LINC00643Q86TS7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 LRTM2-201ENST00000299194 3688 ntAPPRIS P1 TSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 HPGD-214ENST00000542498 2786 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 SLC7A1-201ENST00000380752 7347 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 TACC1-201ENST00000276520 6513 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ETAA1-201ENST00000272342 3418 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 MYO7A-201ENST00000409619 7106 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 PDK2-216ENST00000614357 2493 ntTSL 5 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 AC108024.1-201ENST00000626286 1721 ntBASIC8.91□□□□□ -0.98
LINC00643Q86TS7 AKAP1-208ENST00000572557 3098 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 PARP15-205ENST00000483793 4439 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 SRRT-215ENST00000614484 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 CD34-201ENST00000310833 8246 ntAPPRIS P2 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 TIPARP-202ENST00000461166 4181 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
LINC00643Q86TS7 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AL607033.1-201ENST00000623900 1599 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 RASAL1-201ENST00000261729 3382 ntAPPRIS P3 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 MBP-207ENST00000397865 2127 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AP001150.1-201ENST00000558822 2128 ntTSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 HS6ST1-201ENST00000259241 3932 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 POLL-201ENST00000299206 2670 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AC106788.1-201ENST00000550753 2661 ntTSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AC009093.2-202ENST00000620513 2079 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LRRCC1-201ENST00000360375 3813 ntAPPRIS P2 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 PDIK1L-204ENST00000619836 4252 ntAPPRIS P1 TSL 3 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 DERL3-203ENST00000404056 3113 ntTSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AC008158.1-201ENST00000578759 3668 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SLC4A9-201ENST00000432095 3086 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AC005154.3-201ENST00000419639 1393 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 KCNH7-201ENST00000328032 2434 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 TRPC7-203ENST00000502753 2424 ntTSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 GRHL3-201ENST00000236255 1870 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 PMS2P7-201ENST00000506558 1336 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LCMT2-201ENST00000305641 6957 ntAPPRIS P1 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SLC18A1-204ENST00000437980 2822 ntTSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 MIR662-201ENST00000384847 95 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SAPCD2P4-201ENST00000424595 1171 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 IL11-204ENST00000590625 1028 ntTSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 PCSK1-202ENST00000508626 2234 ntTSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 SIGLEC11-203ENST00000447370 3173 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 LINC01561-201ENST00000369071 2176 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 RGPD8-203ENST00000409750 5544 ntAPPRIS ALT2 TSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 AL162615.1-201ENST00000429893 1653 ntBASIC8.9□□□□□ -0.98
LINC00643Q86TS7 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 FOSB-204ENST00000585836 3550 ntTSL 1 (best) BASIC8.9□□□□□ -0.98
LINC00643Q86TS7 GIT2-204ENST00000361006 5444 ntTSL 5 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 AJ239328.1-201ENST00000626237 4807 ntTSL 5 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 ADGRF3-202ENST00000333478 3896 ntTSL 5 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 ZKSCAN5-202ENST00000394170 4344 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 SORL1-201ENST00000260197 10904 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 PLD5-204ENST00000442594 3305 ntAPPRIS P3 TSL 5 BASIC8.9□□□□□ -0.99
LINC00643Q86TS7 LEPROT-201ENST00000371065 4622 ntAPPRIS P1 TSL 1 (best) BASIC8.9□□□□□ -0.99
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms