Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 NUTM2HP-201ENST00000442076 2498 ntBASIC12.81□□□□□ -0.36
SOX2P48431 STK3-218ENST00000617590 2485 ntTSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 NIN-206ENST00000453196 6785 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC12.81□□□□□ -0.36
SOX2P48431 MLXIP-208ENST00000538698 5097 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SOX2P48431 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SOX2P48431 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
SOX2P48431 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 KRT18P25-201ENST00000508931 1278 ntBASIC12.8□□□□□ -0.36
SOX2P48431 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.8□□□□□ -0.36
SOX2P48431 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.8□□□□□ -0.36
SOX2P48431 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC12.8□□□□□ -0.36
SOX2P48431 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC12.8□□□□□ -0.36
SOX2P48431 AP001160.2-201ENST00000596071 487 ntBASIC12.8□□□□□ -0.36
SOX2P48431 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 AC093512.1-201ENST00000617969 520 ntBASIC12.8□□□□□ -0.36
SOX2P48431 AC005252.2-201ENST00000624630 1141 ntBASIC12.8□□□□□ -0.36
SOX2P48431 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 AL356585.2-201ENST00000625078 2396 ntBASIC12.8□□□□□ -0.36
SOX2P48431 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 KRT18P28-201ENST00000453838 1332 ntBASIC12.8□□□□□ -0.36
SOX2P48431 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 DHX37-201ENST00000308736 4550 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
SOX2P48431 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
SOX2P48431 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SOX2P48431 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
SOX2P48431 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
SOX2P48431 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms