Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
SMARCA1P28370 OR2K2-202ENST00000374428 1038 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SMARCA1P28370 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC16.44■□□□□ 0.22
SMARCA1P28370 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC16.44■□□□□ 0.22
SMARCA1P28370 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 AC005740.1-201ENST00000515639 522 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.44■□□□□ 0.22
SMARCA1P28370 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
SMARCA1P28370 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.44■□□□□ 0.22
SMARCA1P28370 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC16.44■□□□□ 0.22
SMARCA1P28370 MIR3677-201ENST00000578964 60 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 RN7SL455P-201ENST00000580629 282 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 AC012044.1-201ENST00000603431 297 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
SMARCA1P28370 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 MARK2P16-201ENST00000605714 1723 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 AL009178.2-201ENST00000597278 2719 ntBASIC16.44■□□□□ 0.22
SMARCA1P28370 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SMARCA1P28370 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.44■□□□□ 0.22
SMARCA1P28370 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SMARCA1P28370 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 KRT8P19-201ENST00000551916 1455 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 AC073869.2-201ENST00000417338 1026 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 AC234782.1-201ENST00000451950 919 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 CEP164P1-201ENST00000455142 418 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 AP000358.1-201ENST00000456260 156 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.43■□□□□ 0.22
SMARCA1P28370 FGFR3P5-201ENST00000564496 886 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 AL133467.4-201ENST00000602953 725 ntBASIC16.43■□□□□ 0.22
SMARCA1P28370 PPA1-206ENST00000625364 644 ntTSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.43■□□□□ 0.22
SMARCA1P28370 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SMARCA1P28370 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SMARCA1P28370 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SMARCA1P28370 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.42■□□□□ 0.22
SMARCA1P28370 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SMARCA1P28370 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 AC067931.2-201ENST00000623655 2003 ntBASIC16.42■□□□□ 0.22
SMARCA1P28370 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SMARCA1P28370 LINC00265-2P-201ENST00000413372 782 ntBASIC16.42■□□□□ 0.22
SMARCA1P28370 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC16.42■□□□□ 0.22
SMARCA1P28370 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC16.42■□□□□ 0.22
SMARCA1P28370 ALG1L13P-202ENST00000519320 584 ntBASIC16.42■□□□□ 0.22
SMARCA1P28370 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms