Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
COL8A1P27658 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
COL8A1P27658 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL8A1P27658 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL8A1P27658 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL8A1P27658 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
COL8A1P27658 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
COL8A1P27658 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 OR2R1P-201ENST00000441404 914 ntBASIC12.62□□□□□ -0.39
COL8A1P27658 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 AL035414.1-201ENST00000451327 857 ntBASIC12.62□□□□□ -0.39
COL8A1P27658 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC12.62□□□□□ -0.39
COL8A1P27658 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC12.62□□□□□ -0.39
COL8A1P27658 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC12.62□□□□□ -0.39
COL8A1P27658 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
COL8A1P27658 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC12.62□□□□□ -0.39
COL8A1P27658 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC12.62□□□□□ -0.39
COL8A1P27658 TRMT112P3-201ENST00000580149 358 ntBASIC12.62□□□□□ -0.39
COL8A1P27658 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 AL353622.2-201ENST00000605846 425 ntBASIC12.62□□□□□ -0.39
COL8A1P27658 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 PRAL-201ENST00000624952 3286 ntBASIC12.62□□□□□ -0.39
COL8A1P27658 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 AC067750.1-201ENST00000608826 6545 ntBASIC12.62□□□□□ -0.39
COL8A1P27658 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
COL8A1P27658 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
COL8A1P27658 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
COL8A1P27658 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 AC073347.1-201ENST00000421633 2643 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.61□□□□□ -0.39
COL8A1P27658 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
COL8A1P27658 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC12.61□□□□□ -0.39
COL8A1P27658 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC12.61□□□□□ -0.39
COL8A1P27658 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.61□□□□□ -0.39
COL8A1P27658 RN7SL23P-201ENST00000484055 275 ntBASIC12.61□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms