Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLIP3Q96DZ5 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 E2F3P2-201ENST00000447755 1422 ntBASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 MIR769-201ENST00000390225 118 ntBASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 HNRNPA1P36-201ENST00000521313 955 ntBASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC091544.8-201ENST00000619490 361 ntBASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 ACE3P-201ENST00000423435 1973 ntBASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 ADD2-202ENST00000355733 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 DENND3-221ENST00000523308 2959 ntTSL 2 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLIP3Q96DZ5 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 REEP1-202ENST00000453231 940 ntTSL 2 BASIC14.09□□□□□ -0.15
CLIP3Q96DZ5 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms