Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RNF20Q5VTR2 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AL354877.1-201ENST00000424412 413 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 FAM21FP-201ENST00000426241 1131 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 ST13P19-201ENST00000442505 1124 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 KRT223P-202ENST00000449164 1292 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 RNF41-210ENST00000552244 716 ntTSL 3 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AC017083.2-201ENST00000608069 979 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AC021016.3-201ENST00000608367 477 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AL162426.1-201ENST00000624141 743 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 COX11-210ENST00000639671 696 ntBASIC17.3■□□□□ 0.36
RNF20Q5VTR2 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC17.3■□□□□ 0.36
RNF20Q5VTR2 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 MIR4783-201ENST00000580343 82 ntBASIC17.29■□□□□ 0.36
RNF20Q5VTR2 MIR6805-201ENST00000615055 62 ntBASIC17.29■□□□□ 0.36
RNF20Q5VTR2 Z98259.2-201ENST00000641583 609 ntBASIC17.29■□□□□ 0.36
RNF20Q5VTR2 AC015818.8-201ENST00000587907 1519 ntBASIC17.29■□□□□ 0.36
RNF20Q5VTR2 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 LAP3P2-201ENST00000454686 1454 ntBASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 AL359183.1-201ENST00000623796 2132 ntBASIC17.29■□□□□ 0.36
RNF20Q5VTR2 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
RNF20Q5VTR2 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RNF20Q5VTR2 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms