Protein–RNA interactions for Protein: P58304

VSX2, Visual system homeobox 2, humanhuman

Predicted RBP Predictions only

Length 361 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2P58304 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.9□□□□□ -0.18
VSX2P58304 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 DEF8-202ENST00000418391 852 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 GAS5-209ENST00000430245 723 ntTSL 3 BASIC13.9□□□□□ -0.18
VSX2P58304 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 AC005077.2-201ENST00000449786 690 ntBASIC13.9□□□□□ -0.18
VSX2P58304 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.9□□□□□ -0.18
VSX2P58304 RCC2P8-201ENST00000502779 1035 ntBASIC13.9□□□□□ -0.18
VSX2P58304 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.9□□□□□ -0.18
VSX2P58304 SDHD-202ENST00000525291 790 ntTSL 3 BASIC13.9□□□□□ -0.18
VSX2P58304 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC13.9□□□□□ -0.18
VSX2P58304 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 AC009779.1-201ENST00000551138 283 ntBASIC13.9□□□□□ -0.18
VSX2P58304 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 SORD2P-201ENST00000558556 1069 ntBASIC13.9□□□□□ -0.18
VSX2P58304 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.9□□□□□ -0.18
VSX2P58304 AL132994.2-201ENST00000603120 687 ntBASIC13.9□□□□□ -0.18
VSX2P58304 AL645939.5-201ENST00000606834 243 ntBASIC13.9□□□□□ -0.18
VSX2P58304 AC091544.8-201ENST00000619490 361 ntBASIC13.9□□□□□ -0.18
VSX2P58304 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC13.9□□□□□ -0.18
VSX2P58304 AL805961.1-203ENST00000641078 1258 ntBASIC13.9□□□□□ -0.18
VSX2P58304 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
VSX2P58304 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 AC107918.4-201ENST00000641966 3141 ntBASIC13.9□□□□□ -0.18
VSX2P58304 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
VSX2P58304 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.9□□□□□ -0.18
VSX2P58304 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
VSX2P58304 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
VSX2P58304 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.9□□□□□ -0.19
VSX2P58304 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 AC041040.2-201ENST00000622926 2899 ntBASIC13.89□□□□□ -0.19
VSX2P58304 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VSX2P58304 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.89□□□□□ -0.19
VSX2P58304 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.89□□□□□ -0.19
VSX2P58304 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC13.89□□□□□ -0.19
VSX2P58304 HNRNPA1P41-201ENST00000397777 928 ntBASIC13.89□□□□□ -0.19
VSX2P58304 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.89□□□□□ -0.19
VSX2P58304 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 REEP1-202ENST00000453231 940 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 AC125604.1-201ENST00000496255 707 ntBASIC13.89□□□□□ -0.19
VSX2P58304 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC13.89□□□□□ -0.19
VSX2P58304 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
VSX2P58304 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC13.89□□□□□ -0.19
VSX2P58304 AL139099.5-201ENST00000635274 300 ntBASIC13.89□□□□□ -0.19
VSX2P58304 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VSX2P58304 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VSX2P58304 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
VSX2P58304 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
VSX2P58304 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
VSX2P58304 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms